Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 6.8e-204 713.8 358 100.0
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 6.8e-204 713.8 358 100.0
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.0e-191 673.3 364 93.1
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-191 672.5 362 93.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-188 662.9 366 91.8
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.4e-188 662.9 366 91.8
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 8.9e-188 660.2 366 91.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.6e-187 658.7 366 91.3
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.4e-187 658.3 366 91.0
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 5.8e-187 657.5 366 91.5
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.3e-186 656.4 366 91.0
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.2e-186 655.6 372 88.2
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 2.4e-185 652.1 371 88.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 7.1e-185 650.6 371 88.1
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.2e-184 649.8 371 87.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.1e-168 595.9 378 81.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 1.1e-158 563.5 377 76.1
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 5.6e-158 561.2 364 77.5
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.4e-155 552.0 364 75.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.2e-154 549.3 364 75.0
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.4e-153 546.6 364 74.5
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.2e-153 545.4 363 75.8
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.5e-153 544.7 363 75.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.2e-152 543.5 371 74.1
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.6e-152 541.6 370 74.3
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.8e-151 539.7 364 73.4
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 3.0e-151 538.9 364 73.4
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.0e-151 538.9 379 71.8
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 6.7e-151 537.7 369 74.0
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 6.7e-151 537.7 363 73.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.1e-150 537.0 373 71.8
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.1e-150 537.0 371 74.1
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.1e-150 537.0 364 73.6
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.9e-150 536.2 370 73.5
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.3e-150 535.4 365 72.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 7.4e-150 534.3 374 70.6
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 7.4e-150 534.3 365 74.2
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.8e-149 532.3 365 74.0
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.7e-149 531.9 363 72.2
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.7e-149 531.9 368 72.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 3.7e-149 531.9 379 71.5
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.7e-149 531.9 359 74.9
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.4e-148 529.3 365 71.8
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.1e-148 528.9 364 72.0
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.1e-148 528.9 373 71.3
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 5.3e-148 528.1 372 72.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.3e-148 528.1 379 71.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.2e-147 526.9 365 71.5
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.2e-147 526.9 365 73.4
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.5e-147 526.6 379 69.9
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 3.4e-147 525.4 364 71.2
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.4e-147 525.4 358 72.9
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 4.5e-147 525.0 364 72.0
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.0e-146 523.9 379 69.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 1.3e-146 523.5 364 72.5
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 2.2e-146 522.7 368 71.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 8.4e-146 520.8 364 72.3
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.5e-145 519.2 379 70.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 9.3e-145 517.3 379 68.9
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.6e-144 516.5 360 70.8
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.1e-144 516.2 351 73.5
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.1e-144 516.2 359 72.7
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 2.7e-144 515.8 364 72.0
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.3e-143 513.5 363 70.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.8e-143 513.1 379 68.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.7e-142 508.1 364 70.9
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.8e-141 505.8 364 69.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 4.8e-141 505.0 379 66.8
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 6.3e-141 504.6 366 68.3
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.8e-140 503.1 364 69.8
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 4.1e-140 501.9 367 68.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.9e-140 501.1 398 65.8
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.0e-138 497.3 365 69.6
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 5.0e-138 495.0 365 67.9
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-137 493.8 382 64.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.5e-137 491.5 365 66.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 7.2e-137 491.1 374 65.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 7.2e-137 491.1 364 68.4
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-136 490.0 382 64.1
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.1e-136 489.6 365 65.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.9e-136 487.6 376 65.7
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.9e-135 485.3 364 67.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.7e-135 484.6 357 68.1
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.7e-133 478.8 376 64.9
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 3.7e-133 478.8 365 66.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 4.1e-132 475.3 363 65.8
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 5.3e-132 474.9 365 66.6
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.2e-130 469.5 368 64.7
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.0e-130 468.4 360 65.8
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-129 467.2 368 63.9
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.4e-129 466.8 366 65.6
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.5e-129 466.1 367 63.8
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 4.2e-129 465.3 366 65.3
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 7.2e-129 464.5 364 64.3
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 7.2e-129 464.5 367 64.3
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.4e-129 464.2 317 73.5
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 9.4e-129 464.2 364 64.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.7e-128 462.6 366 63.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.0e-127 460.7 367 64.6
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 3.0e-127 459.1 365 64.4
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.9e-127 458.8 367 64.6
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 6.7e-127 458.0 367 64.0
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 8.8e-127 457.6 368 63.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.0e-126 456.4 366 64.5
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.3e-125 453.8 312 73.7
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.8e-125 452.6 366 61.5
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.2e-123 447.2 365 63.8
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 5.9e-123 444.9 362 65.5
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 9.4e-121 437.6 341 63.3
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.1e-120 436.4 379 60.4
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.1e-120 436.4 364 60.2
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 9.7e-118 427.6 352 63.9
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.6e-115 420.2 293 73.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.5e-113 412.9 357 59.9
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.2e-112 410.6 386 54.4
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.8e-111 404.4 318 66.7
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-109 400.6 317 65.9
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.7e-109 399.1 360 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 2.0e-102 376.7 357 54.9
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 5.7e-102 375.2 369 55.8
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.0e-98 362.1 270 67.0
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 5.7e-94 348.6 308 57.1
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.7e-91 339.7 296 58.4
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.2e-84 314.7 189 84.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.3e-71 273.5 162 84.6
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.4e-68 264.2 276 50.0
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.1e-68 262.7 161 79.5
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.0e-66 258.1 366 41.0
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.3e-65 253.1 258 54.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-58 231.5 209 58.4
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.7e-58 230.7 206 56.8
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.9e-57 227.3 153 75.8
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.2e-56 224.6 331 36.3
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.9e-55 218.8 150 74.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.7e-50 204.1 111 91.9
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.3e-50 203.8 167 63.5
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.1e-49 201.4 181 54.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.1e-48 195.3 167 61.7
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.8e-42 177.6 133 73.7
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 3.9e-42 176.4 133 72.9
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.9e-41 174.1 233 42.1
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 3.8e-37 159.8 93 89.2
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 4.0e-31 139.8 81 86.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.0e-30 137.5 98 64.3
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.4e-30 136.7 121 61.2
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-24 117.1 189 39.2
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.9e-22 109.4 84 65.5
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 1.0e-21 108.6 76 75.0
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3


User provided reference genes

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