Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 3.5e-70 268.1 128 100.0
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 3.1e-66 255.0 128 95.3
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 2.4e-63 245.4 128 89.8
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 4.2e-63 244.6 128 90.6
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 7.1e-63 243.8 128 89.8
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 2.1e-62 242.3 128 90.6
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 2.7e-62 241.9 127 89.8
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 1.1e-55 219.9 135 78.5
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 4.6e-54 214.5 117 88.9
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 8.7e-53 210.3 106 93.4
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 2.0e-49 199.1 124 79.0
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 2.3e-45 185.7 97 90.7
BcaC05g27014 Brassica carinata HOM05D012303 ORTHO05D014119 1.7e-40 169.5 88 89.8
C09p30450 Brassica napus HOM05D012303 ORTHO05D014119 2.8e-35 152.1 90 82.2
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 1.2e-33 146.7 108 66.7
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 1.4e-18 96.7 65 73.8
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.4e-18 95.9 105 55.2
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 1.2e-17 93.6 97 55.7
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 2.0e-17 92.8 64 68.8
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 7.7e-17 90.9 65 70.8
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 6.5e-16 87.8 92 56.5
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 7.2e-15 84.3 129 45.0
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 8.0e-14 80.9 129 42.6
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 5.2e-13 78.2 121 42.1
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.6e-12 75.9 109 45.9
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 1.4e-10 70.1 104 42.3
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 1.8e-10 69.7 118 39.0
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 1.8e-10 69.7 110 40.9
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 3.1e-10 68.9 109 41.3
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 3.1e-10 68.9 109 41.3
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 4.1e-10 68.6 120 43.3
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 4.1e-10 68.6 97 44.3
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 5.4e-10 68.2 102 45.1
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 7.0e-10 67.8 99 49.5
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 9.1e-10 67.4 106 46.2
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 9.1e-10 67.4 106 43.4
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 9.1e-10 67.4 106 43.4
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 9.1e-10 67.4 112 39.3
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 9.1e-10 67.4 105 47.6
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 1.2e-09 67.0 115 40.0
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 1.2e-09 67.0 112 39.3
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.6e-09 66.6 98 45.9
BcaB04g19563 Brassica carinata HOM05D010688 ORTHO05D010630 2.0e-09 66.2 32 87.5
BcaC04g23787 Brassica carinata HOM05D010688 ORTHO05D010630 2.0e-09 66.2 32 87.5
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.7e-09 65.9 97 41.2
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 3.5e-09 65.5 116 38.8
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 4.5e-09 65.1 101 44.6
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 4.5e-09 65.1 103 42.7
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 4.5e-09 65.1 111 37.8
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 4.5e-09 65.1 111 37.8
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 4.5e-09 65.1 103 40.8
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 4.5e-09 65.1 105 39.0
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 5.9e-09 64.7 116 41.4
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 5.9e-09 64.7 116 38.8
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 5.9e-09 64.7 116 38.8
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 7.7e-09 64.3 116 38.8
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 7.7e-09 64.3 116 38.8
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 1.0e-08 63.9 102 44.1
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 1.0e-08 63.9 120 43.3
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.3e-08 63.5 138 37.0
BcaC08g43441 Brassica carinata HOM05D010688 ORTHO05D010630 1.7e-08 63.2 32 84.4
BolC6t35892H Brassica oleracea HOM05D010688 ORTHO05D010630 1.7e-08 63.2 32 84.4
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-08 63.2 110 40.0
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-08 63.2 110 40.0
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 1.7e-08 63.2 115 40.9
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 1.7e-08 63.2 109 42.2
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.7e-08 63.2 115 39.1
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 1.7e-08 63.2 109 41.3
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 2.2e-08 62.8 110 41.8
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 2.9e-08 62.4 99 43.4
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 2.9e-08 62.4 109 42.2
BcaC08g44289 Brassica carinata HOM05D010688 ORTHO05D010630 3.8e-08 62.0 32 78.1
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 3.8e-08 62.0 94 41.5
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 3.8e-08 62.0 115 40.0
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 5.0e-08 61.6 120 36.7
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 5.0e-08 61.6 120 36.7
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 6.5e-08 61.2 99 43.4
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 6.5e-08 61.2 99 43.4
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 6.5e-08 61.2 99 43.4
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 6.5e-08 61.2 99 43.4
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 6.5e-08 61.2 111 38.7
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 6.5e-08 61.2 135 35.6
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 6.5e-08 61.2 112 37.5
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 6.5e-08 61.2 110 34.5
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 8.5e-08 60.8 115 40.0
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 8.5e-08 60.8 116 37.1
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 8.5e-08 60.8 116 37.1
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 8.5e-08 60.8 116 37.1
BcaC03g14592 Brassica carinata HOM05D010688 ORTHO05D010630 1.1e-07 60.5 32 75.0
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 1.1e-07 60.5 103 42.7
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 1.1e-07 60.5 120 40.8
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 1.1e-07 60.5 117 36.8
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 1.1e-07 60.5 117 36.8
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 1.1e-07 60.5 120 37.5
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 1.5e-07 60.1 113 38.1
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 1.5e-07 60.1 111 36.0
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.5e-07 60.1 120 36.7
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 1.5e-07 60.1 114 40.4
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.9e-07 59.7 97 43.3
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.9e-07 59.7 116 38.8
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.9e-07 59.7 116 38.8
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 2.5e-07 59.3 116 38.8
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 2.5e-07 59.3 142 33.8
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 3.2e-07 58.9 107 38.3
BolC9t56161H Brassica oleracea HOM05D022249 ORTHO05D018806 3.2e-07 58.9 30 80.0
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 3.2e-07 58.9 110 41.8
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 3.2e-07 58.9 113 37.2
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 3.2e-07 58.9 116 38.8
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 3.2e-07 58.9 116 38.8
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 3.2e-07 58.9 112 41.1
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 4.2e-07 58.5 124 37.1
CARHR122920 Cardamine hirsuta HOM05D003015 ORTHO05D014119 4.2e-07 58.5 89 44.9
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 4.2e-07 58.5 142 34.5
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 5.5e-07 58.2 115 37.4
BolC5t30855H Brassica oleracea HOM05D022249 ORTHO05D018806 5.5e-07 58.2 30 80.0
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 5.5e-07 58.2 112 36.6
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 5.5e-07 58.2 95 43.2
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 7.2e-07 57.8 118 34.7
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 7.2e-07 57.8 115 37.4
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 7.2e-07 57.8 127 37.8
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 7.2e-07 57.8 117 31.6
C09p33230 Brassica napus HOM05D022249 ORTHO05D018806 9.4e-07 57.4 30 76.7
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 9.4e-07 57.4 127 37.0
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 9.4e-07 57.4 146 32.9
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 1.2e-06 57.0 127 37.0
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 1.2e-06 57.0 110 37.3
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 1.2e-06 57.0 119 41.2
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 1.2e-06 57.0 103 40.8
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 1.2e-06 57.0 128 33.6
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 1.2e-06 57.0 58 56.9
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 1.2e-06 57.0 122 36.9
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 1.2e-06 57.0 110 36.4
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 1.6e-06 56.6 118 32.2
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.6e-06 56.6 97 42.3
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 1.6e-06 56.6 117 36.8
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 1.6e-06 56.6 128 33.6
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 1.6e-06 56.6 112 37.5
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 2.1e-06 56.2 126 31.7
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 2.1e-06 56.2 115 35.7
BcaC02g11474 Brassica carinata HOM05D010688 ORTHO05D010630 2.7e-06 55.8 32 71.9
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 2.7e-06 55.8 116 38.8
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 2.7e-06 55.8 115 37.4
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 4.7e-06 55.1 100 40.0
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 4.7e-06 55.1 97 41.2
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.7e-06 55.1 97 41.2
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.7e-06 55.1 97 41.2
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 4.7e-06 55.1 123 36.6
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 4.7e-06 55.1 100 36.0
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 6.1e-06 54.7 110 37.3
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 6.1e-06 54.7 132 33.3
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 8.0e-06 54.3 119 39.5
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 8.0e-06 54.3 142 33.1
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 8.0e-06 54.3 128 34.4


User provided reference genes

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