Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.5e-183 645.6 389 100.0
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.5e-183 645.6 389 100.0
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 1.0e-168 597.0 389 93.3
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 8.8e-165 583.9 389 92.8
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 5.9e-161 571.2 336 91.7
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.0e-156 556.2 301 93.7
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 3.4e-156 555.4 332 88.3
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 4.4e-156 555.1 336 89.6
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.2e-153 547.0 301 92.0
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 2.0e-148 529.6 354 81.9
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 2.4e-146 522.7 340 82.9
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.8e-134 482.6 301 80.1
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 1.1e-133 480.7 327 75.8
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 6.8e-133 478.0 342 76.0
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 8.9e-133 477.6 291 80.4
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 8.9e-133 477.6 291 80.4
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 8.9e-133 477.6 294 81.0
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.0e-132 476.5 303 79.5
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 2.6e-132 476.1 298 79.9
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 5.8e-132 474.9 294 81.0
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 9.8e-132 474.2 301 78.1
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.3e-131 473.8 290 77.6
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.7e-131 473.4 299 77.6
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.1e-130 470.7 332 72.0
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.9e-130 469.9 362 73.2
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 5.4e-130 468.4 332 71.7
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 1.2e-129 467.2 296 77.7
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.6e-129 466.8 294 77.9
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 2.1e-129 466.5 339 69.9
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 2.1e-129 466.5 287 79.8
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 2.1e-129 466.5 287 79.4
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 6.0e-129 464.9 299 76.3
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.7e-128 463.4 287 79.4
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.7e-128 463.4 352 70.2
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.3e-128 463.0 331 70.4
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.3e-128 463.0 344 73.3
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 3.0e-128 462.6 337 69.1
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 3.9e-128 462.2 340 72.1
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 5.1e-128 461.8 287 77.7
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 1.9e-127 459.9 287 78.4
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 1.9e-127 459.9 328 70.7
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 2.5e-127 459.5 290 77.9
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.3e-127 459.1 336 70.2
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.3e-127 459.1 331 70.1
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.3e-127 458.8 296 77.7
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.2e-126 457.2 328 70.1
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 6.2e-126 454.9 291 77.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 8.1e-126 454.5 328 69.8
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 8.1e-126 454.5 349 68.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 8.1e-126 454.5 334 69.5
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.1e-125 454.1 328 70.7
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.1e-125 454.1 285 76.5
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.8e-125 453.4 267 81.3
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 5.2e-125 451.8 331 69.2
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 8.9e-125 451.1 285 77.2
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 2.6e-124 449.5 329 69.3
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 5.8e-124 448.4 294 75.9
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 5.8e-124 448.4 301 73.4
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.4e-122 443.7 281 77.2
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 4.1e-122 442.2 316 71.5
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 9.2e-122 441.0 352 70.2
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 1.6e-121 440.3 385 63.4
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 3.0e-120 436.0 328 67.1
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 3.0e-120 436.0 318 70.4
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 6.6e-120 434.9 336 67.0
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.9e-119 433.3 332 66.9
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.5e-119 433.0 288 74.7
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 4.3e-119 432.2 338 66.6
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 5.6e-119 431.8 288 75.3
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 8.1e-118 427.9 294 68.7
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.8e-117 426.8 329 66.6
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 2.4e-117 426.4 364 66.8
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.2e-116 424.1 222 95.0
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 2.2e-115 419.9 260 81.2
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 8.4e-115 417.9 222 93.7
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 5.4e-114 415.2 302 71.9
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.3e-112 410.6 300 68.3
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.3e-112 410.6 260 76.5
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 5.1e-112 408.7 382 57.3
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 4.3e-111 405.6 334 65.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.3e-110 404.1 294 69.0
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.3e-110 404.1 353 58.6
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.3e-110 404.1 245 78.8
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 4.8e-110 402.1 300 67.7
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 5.3e-109 398.7 301 67.8
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.2e-108 397.5 321 64.5
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.0e-108 396.7 430 56.7
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.6e-108 396.4 301 68.4
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 8.4e-107 391.3 302 67.9
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 6.0e-105 385.2 281 70.1
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.0e-104 384.4 322 62.1
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 3.3e-103 379.4 332 59.9
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 3.6e-102 375.9 289 71.6
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 1.1e-101 374.4 350 58.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 9.0e-101 371.3 322 62.4
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 6.0e-97 358.6 221 80.5
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 2.3e-96 356.7 262 70.6
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 2.4e-93 346.7 217 78.8
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 5.3e-93 345.5 217 80.6
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 6.0e-89 332.0 293 55.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 5.0e-83 312.4 332 52.7
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.5e-83 312.0 201 77.6
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 8.4e-83 311.6 294 52.7
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.0e-80 303.1 251 62.2
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 6.7e-80 302.0 299 51.2
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.2e-74 282.7 293 47.4
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 2.2e-70 270.4 168 80.4
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.5e-68 264.2 302 47.0
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 4.2e-66 256.1 226 53.5
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 6.3e-62 242.3 182 67.6
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 5.0e-51 206.1 271 41.0
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.7e-49 200.3 114 78.1
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.7e-49 199.5 338 33.4
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.5e-47 194.5 113 78.8
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 9.1e-45 185.3 121 76.9
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.2e-44 184.9 299 41.8
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.0e-40 170.2 101 87.1
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 7.2e-34 149.1 103 65.0
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.1e-33 147.5 112 72.3
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.7e-30 137.9 177 75.1
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 4.9e-30 136.3 77 79.2
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.2e-29 133.7 91 67.0
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.3e-27 127.5 77 75.3
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.9e-26 124.4 76 72.4
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 2.0e-20 104.4 76 65.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 2.0e-15 87.8 126 42.9
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 3.4e-15 87.0 79 58.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 2.2e-14 84.3 98 46.9
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 1.2e-12 78.6 53 66.0
BolC4t26141H Brassica oleracea HOM05D035675 ORTHO05D007652 4.0e-08 63.5 67 58.2
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 8.4e-06 55.8 161 36.6


User provided reference genes

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