Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1663.7 846 100.0
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1651.3 846 99.3
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1640.9 846 98.5
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1639.4 846 98.3
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1637.9 846 98.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1632.5 846 98.0
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1545.0 849 92.1
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1530.8 849 92.0
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1518.8 849 90.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1514.2 849 90.6
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1498.4 849 89.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1491.5 896 85.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1453.0 859 86.3
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1361.7 861 78.7
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1224.5 860 70.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1222.6 858 70.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1222.6 858 70.0
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1222.2 858 69.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1221.8 861 69.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1220.7 860 70.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1219.1 859 70.7
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1211.1 862 69.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 858 70.0
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1206.4 859 70.1
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1199.9 856 69.2
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 858 69.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1198.3 861 68.5
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1198.0 857 69.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1194.9 860 69.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1193.3 860 69.8
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1192.2 860 70.1
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1191.0 878 68.2
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1191.0 861 69.3
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1190.6 865 68.6
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1188.7 860 69.4
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 893 67.4
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1179.5 859 68.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 858 67.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 859 68.6
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1173.7 859 67.5
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1172.5 860 67.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1170.2 862 67.2
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 862 67.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1167.5 856 68.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1161.0 862 67.4
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1159.4 860 66.7
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1159.1 859 66.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 861 66.6
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 860 66.6
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1154.4 830 68.9
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 860 67.2
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1151.7 860 66.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1151.0 860 66.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1151.0 862 66.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1149.4 858 67.1
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1148.7 858 66.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1146.0 861 66.3
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1145.6 853 66.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1144.0 854 67.2
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1141.7 886 65.2
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1140.2 860 65.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1133.6 861 67.0
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1130.9 864 65.4
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1129.8 860 65.7
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 862 65.5
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1119.8 857 65.9
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1119.0 923 61.9
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 851 65.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1117.1 876 64.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1117.1 859 65.4
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 856 65.3
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 856 65.2
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1104.7 857 63.7
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1104.7 860 65.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1104.4 834 65.7
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1100.9 862 64.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1098.6 856 64.8
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1096.3 862 64.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1094.0 857 65.0
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1092.0 899 62.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1089.7 1002 57.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1083.9 851 63.5
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1077.4 868 63.6
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1075.8 859 63.6
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 5.7e-310 1067.4 856 63.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 8.3e-309 1063.5 870 61.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 1.5e-305 1052.7 797 66.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 1.9e-305 1052.4 851 62.4
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.1e-304 1048.9 859 61.4
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 4.4e-302 1041.2 944 58.2
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.1e-300 1036.6 880 61.7
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 3.3e-281 971.8 888 58.1
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 5.1e-274 948.0 935 55.6
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.1e-271 940.3 747 65.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 4.6e-267 924.9 690 67.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 7.1e-260 901.0 789 60.8
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.8e-255 886.3 832 61.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 5.3e-255 884.8 645 68.5
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.3e-255 884.8 877 51.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 3.3e-249 865.5 873 51.0
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.6e-249 864.8 870 51.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-229 799.7 621 64.7
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 9.7e-217 757.7 858 45.7
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 7.5e-193 678.3 955 41.7
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 8.5e-189 664.8 883 43.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 8.5e-189 664.8 494 67.2
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 5.2e-186 655.6 554 59.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.0e-177 627.1 613 59.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.2e-176 623.6 582 57.7
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.0e-170 604.7 382 74.9
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.5e-164 583.6 500 60.4
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.2e-163 581.3 481 62.2
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 9.8e-161 571.6 480 58.1
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.4e-143 513.8 441 61.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 8.7e-133 478.8 327 70.9
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.6e-123 448.0 378 61.4
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.6e-118 431.4 388 67.3
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 6.1e-86 323.2 236 65.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.4e-79 299.3 162 84.0
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 9.2e-66 256.1 669 28.3
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 7.5e-60 236.5 640 27.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 8.6e-40 169.9 155 56.8
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.8e-38 164.9 528 26.7
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.9e-36 156.4 124 58.9
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.9e-35 154.8 84 89.3
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 4.1e-34 151.0 127 57.5
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 4.3e-31 141.0 129 50.4
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-30 139.4 97 66.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.4e-28 131.0 94 62.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 3.3e-23 114.8 798 20.9
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.7e-16 90.5 42 88.1
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 5.6e-15 87.4 99 47.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-09 68.2 110 35.5
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.8e-06 58.5 56 46.4
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.7e-06 58.2 64 46.9


User provided reference genes

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