PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	17	CH_ath_213	3	4	0.00000255032
Brassica rapa	A10	17	CH_bra_109	3	3	0.00000207838
Capsella rubella	scaffold_8	17	CH_cru_168	3	4	0.00000293549
Citrus sinensis	scaffold00026	17	CH_csi_76	3	3	0.000000409066
Eucalyptus grandis	scaffold_10	17	CH_egr_529	3	4	0.00000115475
Eucalyptus grandis	scaffold_10	17	CH_egr_486	3	3	0.000000288727
Glycine max	Gm02	17	CH_gma_219	3	3	0.00000115541
Glycine max	Gm11	17	CH_gma_218	3	3	0.00000115541
Glycine max	Gm14	17	CH_gma_102	4	5	0.00000000139243
Glycine max	Gm18	17	CH_gma_217	3	3	0.00000115541
Gossypium raimondii	Chr09	17	CH_gra_105	4	6	0.0000000022875
Malus domestica	1	17	CH_mdo_282	2	2	0.000461585
Manihot esculenta	scaffold06512	17	CH_mes_82	3	3	0.000000479038
Oryza sativa ssp. japonica	3	17	CH_osa_387	2	2	0.000358417
Populus trichocarpa	Chr01	17	CH_ptr_212	3	3	0.000000209848
Prunus persica	scaffold_2	17	CH_ppe_435	2	2	0.000720851
Prunus persica	scaffold_6	17	CH_ppe_184	3	3	0.0000000779466
Ricinus communis	29681	17	CH_rco_91	3	3	0.00000005786
Vitis vinifera	chr6	17	CH_vvi_189	3	3	0.000000303754

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V