PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30
Description: signalling

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	18	CH_aly_7	10	24	0.00000347326
Arabidopsis thaliana	3	17	CH_ath_354	13	43	0.00029962
Arabidopsis thaliana	3	18	CH_ath_85	13	43	0.00029962
Capsella rubella	scaffold_4	18	CH_cru_58	10	19	0.000139025
Citrus sinensis	scaffold00046	18	CH_csi_20	13	31	0.000119981
Eucalyptus grandis	scaffold_11	17	CH_egr_568	20	46	0.00000403317
Eucalyptus grandis	scaffold_8	17	CH_egr_586	9	9	0.00000555301
Eucalyptus grandis	scaffold_1	18	CH_egr_183	59	250	0.00000000270108
Eucalyptus grandis	scaffold_11	18	CH_egr_227	20	46	0.00000403317
Eucalyptus grandis	scaffold_11	18	CH_egr_268	55	298	0.0003388
Eucalyptus grandis	scaffold_6	18	CH_egr_258	24	76	0.000142341
Gossypium raimondii	Chr02	18	CH_gra_61	10	12	0.000000616355
Malus domestica	6	17	CH_mdo_232	9	17	0.000230007
Manihot esculenta	scaffold08910	17	CH_mes_210	6	6	0.000429737
Manihot esculenta	scaffold07027	18	CH_mes_19	11	27	0.000984222
Populus trichocarpa	Chr05	17	CH_ptr_139	24	61	0.00000000197647
Populus trichocarpa	Chr01	18	CH_ptr_108	28	126	0.0000943295
Populus trichocarpa	Chr01	18	CH_ptr_85	12	18	0.00000149616
Populus trichocarpa	Chr03	18	CH_ptr_94	36	179	0.0000104
Prunus persica	scaffold_4	17	CH_ppe_83	28	74	0.00000000000229437
Prunus persica	scaffold_4	17	CH_ppe_341	18	61	0.0000795524
Prunus persica	scaffold_1	18	CH_ppe_115	12	29	0.000470033
Ricinus communis	30014	18	CH_rco_23	10	20	0.0000838408
Solanum lycopersicum	ch04	17	CH_sly_226	17	52	0.00000240252
Solanum lycopersicum	ch10	17	CH_sly_253	8	9	0.00000546904
Solanum lycopersicum	ch04	18	CH_sly_73	17	52	0.00000240252
Solanum lycopersicum	ch04	18	CH_sly_74	37	241	0.0000034178
Vitis vinifera	chr1	18	CH_vvi_71	11	14	0.0000000910405
Vitis vinifera	chr4	18	CH_vvi_112	10	20	0.000607552
Zea mays	1	17	CH_zma_40	22	73	0.00000000093611
Zea mays	1	18	CH_zma_20	22	73	0.00000000093611

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V