PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.22
Description: misc.short chain dehydrogenase/reductase (SDR)

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_181	4	4	0.00000037684
Arabidopsis thaliana	3	17	CH_ath_388	3	4	0.000842965
Arabidopsis thaliana	5	17	CH_ath_253	5	22	0.0000169962
Brassica rapa	A04	17	CH_bra_145	4	6	0.0000101453
Citrus sinensis	scaffold00001	17	CH_csi_42	5	5	0.00000000295521
Citrus sinensis	scaffold00018	17	CH_csi_81	4	4	0.00000110017
Citrus sinensis	scaffold00067	17	CH_csi_214	3	3	0.000400885
Citrus sinensis	scaffold00138	17	CH_csi_215	3	3	0.000400885
Citrus sinensis	scaffold00171	17	CH_csi_82	4	4	0.00000110017
Eucalyptus grandis	scaffold_1	17	CH_egr_566	4	4	0.00000375492
Eucalyptus grandis	scaffold_11	17	CH_egr_211	12	72	0.000000000000380168
Eucalyptus grandis	scaffold_2	17	CH_egr_223	7	8	0.000000000000924644
Eucalyptus grandis	scaffold_4	17	CH_egr_68	11	12	1.17589e-22
Eucalyptus grandis	scaffold_8	17	CH_egr_107	10	12	2.15651e-19
Eucalyptus grandis	scaffold_9	17	CH_egr_513	5	8	0.000000660495
Eucalyptus grandis	scaffold_11	18	CH_egr_144	12	72	0.000000000000380168
Eucalyptus grandis	scaffold_4	18	CH_egr_62	11	12	1.17589e-22
Eucalyptus grandis	scaffold_8	18	CH_egr_91	10	12	2.15651e-19
Glycine max	Gm03	17	CH_gma_478	3	3	0.00073814
Glycine max	Gm07	17	CH_gma_164	5	7	0.0000000849697
Glycine max	Gm09	17	CH_gma_174	5	8	0.000000226144
Glycine max	Gm09	17	CH_gma_276	4	5	0.00000867564
Glycine max	Gm16	17	CH_gma_236	4	4	0.00000173841
Glycine max	Gm19	17	CH_gma_275	4	5	0.00000867564
Gossypium raimondii	Chr01	17	CH_gra_181	4	4	0.00000147171
Gossypium raimondii	Chr02	17	CH_gra_48	8	9	4.37927e-16
Gossypium raimondii	Chr06	17	CH_gra_68	7	9	0.00000000000074094
Gossypium raimondii	Chr07	17	CH_gra_344	3	3	0.000596745
Gossypium raimondii	Chr11	17	CH_gra_208	4	5	0.00000734397
Malus domestica	16	17	CH_mdo_203	3	3	0.000133157
Manihot esculenta	scaffold01551	17	CH_mes_243	3	3	0.000626308
Manihot esculenta	scaffold01701	17	CH_mes_98	4	4	0.00000188467
Manihot esculenta	scaffold02892	17	CH_mes_25	7	9	0.00000000000166981
Manihot esculenta	scaffold08542	17	CH_mes_242	3	3	0.000626308
Manihot esculenta	scaffold11279	17	CH_mes_28	6	6	0.0000000000162641
Oryza sativa ssp. japonica	10	17	CH_osa_199	4	5	0.00000153553
Oryza sativa ssp. japonica	4	17	CH_osa_154	5	10	0.000000114544
Oryza sativa ssp. japonica	6	17	CH_osa_83	6	11	0.000000000308585
Oryza sativa ssp. japonica	7	17	CH_osa_9	13	16	3.90516e-30
Oryza sativa ssp. japonica	7	18	CH_osa_9	13	16	3.90516e-30
Populus trichocarpa	Chr02	17	CH_ptr_210	5	8	0.000000186382
Populus trichocarpa	Chr03	17	CH_ptr_460	3	3	0.000587758
Populus trichocarpa	Chr04	17	CH_ptr_461	3	3	0.000587758
Populus trichocarpa	Chr06	17	CH_ptr_122	6	8	0.000000000219358
Populus trichocarpa	Chr10	17	CH_ptr_459	3	3	0.000587758
Populus trichocarpa	Chr15	17	CH_ptr_458	3	3	0.000587758
Populus trichocarpa	Chr16	17	CH_ptr_247	4	4	0.00000141016
Prunus persica	scaffold_1	17	CH_ppe_236	4	4	0.00000168857
Prunus persica	scaffold_2	17	CH_ppe_5	17	19	3.94269e-38
Prunus persica	scaffold_5	17	CH_ppe_238	4	4	0.00000168857
Prunus persica	scaffold_6	17	CH_ppe_237	4	4	0.00000168857
Prunus persica	scaffold_2	18	CH_ppe_5	17	19	3.94269e-38
Ricinus communis	28324	17	CH_rco_57	6	8	0.000000000894125
Ricinus communis	29844	17	CH_rco_75	5	5	0.00000000976038
Ricinus communis	29929	17	CH_rco_39	6	6	0.0000000000321144
Ricinus communis	30174	17	CH_rco_135	4	4	0.00000292295
Solanum lycopersicum	ch00	17	CH_sly_435	3	3	0.000509184
Solanum lycopersicum	ch01	17	CH_sly_80	6	7	0.000000000046837
Solanum lycopersicum	ch03	17	CH_sly_257	4	5	0.00000607361
Solanum lycopersicum	ch12	17	CH_sly_453	4	12	0.000593262
Vitis vinifera	chr1	17	CH_vvi_273	4	6	0.0000160652
Vitis vinifera	chr15	17	CH_vvi_89	7	10	0.00000000000176419
Vitis vinifera	chr16	17	CH_vvi_294	4	7	0.000037411
Vitis vinifera	chr17	17	CH_vvi_389	3	3	0.000434942
Vitis vinifera	chr8	17	CH_vvi_75	7	8	0.000000000000118101
Vitis vinifera	chr8	17	CH_vvi_388	3	3	0.000434942
Vitis vinifera	chr8	19	CH_vvi_2	3	3	0.0000925149
Zea mays	10	17	CH_zma_218	3	3	0.000245941
Zea mays	2	17	CH_zma_217	3	3	0.000245941
Zea mays	4	17	CH_zma_177	4	9	0.0000549329

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V