PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.13
Description: misc.acid and other phosphatases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_243	4	6	0.00000867308
Citrus sinensis	scaffold00175	17	CH_csi_190	3	3	0.000290232
Eucalyptus grandis	scaffold_1	17	CH_egr_405	5	6	0.000000029122
Eucalyptus grandis	scaffold_1	17	CH_egr_271	6	7	0.0000000000886463
Eucalyptus grandis	scaffold_10	17	CH_egr_609	4	5	0.00000919856
Eucalyptus grandis	scaffold_10	17	CH_egr_837	3	3	0.000691108
Eucalyptus grandis	scaffold_2	17	CH_egr_834	3	3	0.000691108
Eucalyptus grandis	scaffold_2	17	CH_egr_835	3	3	0.000691108
Eucalyptus grandis	scaffold_5	17	CH_egr_245	6	6	0.0000000000126922
Eucalyptus grandis	scaffold_6	17	CH_egr_836	3	3	0.000691108
Eucalyptus grandis	scaffold_9	17	CH_egr_365	5	5	0.00000000486439
Glycine max	Gm07	17	CH_gma_277	6	33	0.00000899638
Glycine max	Gm08	17	CH_gma_336	7	80	0.0000532568
Gossypium raimondii	Chr09	17	CH_gra_164	4	4	0.000000694584
Gossypium raimondii	Chr13	17	CH_gra_316	3	3	0.000340931
Malus domestica	14	17	CH_mdo_263	3	4	0.000316805
Malus domestica	4	17	CH_mdo_262	3	4	0.000316805
Malus domestica	6	17	CH_mdo_190	3	3	0.0000792731
Manihot esculenta	scaffold10173	17	CH_mes_208	3	3	0.000400475
Oryza sativa ssp. japonica	12	17	CH_osa_346	3	3	0.000170653
Oryza sativa ssp. japonica	12	17	CH_osa_196	4	5	0.00000120667
Oryza sativa ssp. japonica	5	17	CH_osa_34	9	25	0.00000000000000226851
Oryza sativa ssp. japonica	5	18	CH_osa_46	10	146	0.00000000111431
Populus trichocarpa	Chr10	17	CH_ptr_455	3	3	0.00051868
Prunus persica	scaffold_1	17	CH_ppe_380	3	3	0.000266733
Prunus persica	scaffold_8	17	CH_ppe_148	5	6	0.00000000662623
Solanum lycopersicum	ch05	17	CH_sly_464	3	3	0.000733575
Solanum lycopersicum	ch06	17	CH_sly_200	7	39	0.000000527741
Solanum lycopersicum	ch07	17	CH_sly_465	3	3	0.000733575
Solanum lycopersicum	ch07	17	CH_sly_126	6	11	0.0000000064365
Solanum lycopersicum	ch07	18	CH_sly_70	10	153	0.000000641133
Vitis vinifera	chr1	17	CH_vvi_439	3	4	0.000909357
Vitis vinifera	chr3	17	CH_vvi_360	3	3	0.000227686

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V