PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_63	2	2	0.0000631373
Arabidopsis thaliana	2	17	CH_ath_190	3	10	0.000000637565
Brassica rapa	A09	17	CH_bra_236	2	2	0.000298448
Capsella rubella	scaffold_5	17	CH_cru_70	4	10	0.000000000280077
Eucalyptus grandis	scaffold_7	17	CH_egr_811	2	3	0.000527617
Glycine max	Gm02	17	CH_gma_364	2	2	0.000111262
Gossypium raimondii	Chr13	17	CH_gra_301	2	4	0.000321647
Manihot esculenta	scaffold00109	17	CH_mes_159	2	2	0.0000955201
Oryza sativa ssp. japonica	12	17	CH_osa_128	3	5	0.000000019269
Populus trichocarpa	Chr08	17	CH_ptr_346	2	2	0.0000499813
Ricinus communis	30174	17	CH_rco_271	2	5	0.000981836

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V