PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 17.7.1.2
Description: hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A07	17	CH_bra_29	4	4	0.000000000369607
Citrus sinensis	scaffold00033	17	CH_csi_63	4	6	0.0000000976999
Citrus sinensis	scaffold00101	17	CH_csi_19	5	5	0.00000000000418853
Eucalyptus grandis	scaffold_10	17	CH_egr_143	7	14	2.13098e-16
Eucalyptus grandis	scaffold_8	17	CH_egr_141	6	6	1.9292e-16
Glycine max	Gm07	17	CH_gma_81	5	5	0.0000000000448783
Glycine max	Gm08	17	CH_gma_36	7	7	3.63023e-17
Glycine max	Gm13	17	CH_gma_148	4	4	0.0000000484004
Glycine max	Gm15	17	CH_gma_335	3	3	0.0000511763
Glycine max	Gm20	17	CH_gma_451	3	5	0.000511018
Gossypium raimondii	Chr04	17	CH_gra_237	3	4	0.0000196522
Gossypium raimondii	Chr04	17	CH_gra_134	4	7	0.0000000783051
Malus domestica	12	17	CH_mdo_47	4	4	0.0000000044111
Malus domestica	4	17	CH_mdo_82	4	7	0.00000015419
Malus domestica	5	17	CH_mdo_46	4	4	0.0000000044111
Manihot esculenta	scaffold06407	17	CH_mes_26	5	5	0.00000000000187551
Oryza sativa ssp. japonica	12	17	CH_osa_342	3	10	0.000157014
Oryza sativa ssp. japonica	3	17	CH_osa_367	3	11	0.00021585
Populus trichocarpa	Chr01	17	CH_ptr_140	4	4	0.00000000224202
Populus trichocarpa	Chr05	17	CH_ptr_163	4	5	0.000000011206
Prunus persica	scaffold_2	17	CH_ppe_249	3	3	0.00000354657
Prunus persica	scaffold_6	17	CH_ppe_88	5	6	0.00000000000364835
Solanum lycopersicum	ch01	17	CH_sly_31	7	7	3.40393e-18
Vitis vinifera	chr6	17	CH_vvi_113	5	11	0.000000000347637

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V