PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 16.8.5.1
Description: secondary metabolism.flavonoids.isoflavones.isoflavone reductase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	17	CH_aly_25	3	3	0.000000119593
Arabidopsis thaliana	1	17	CH_ath_113	4	5	0.000000000664103
Capsella rubella	scaffold_2	17	CH_cru_73	4	4	0.000000000280142
Eucalyptus grandis	scaffold_10	17	CH_egr_533	4	6	0.00000134851
Eucalyptus grandis	scaffold_11	17	CH_egr_708	3	3	0.0000731612
Eucalyptus grandis	scaffold_2	17	CH_egr_375	5	8	0.00000000604489
Eucalyptus grandis	scaffold_5	17	CH_egr_388	7	50	0.0000000138873
Eucalyptus grandis	scaffold_5	17	CH_egr_122	8	10	7.26378e-18
Eucalyptus grandis	scaffold_9	17	CH_egr_707	3	3	0.0000731612
Glycine max	Gm01	17	CH_gma_104	4	4	0.00000000193601
Glycine max	Gm11	17	CH_gma_64	5	5	0.000000000000753953
Malus domestica	13	17	CH_mdo_147	3	7	0.0000134154
Malus domestica	8	17	CH_mdo_173	3	9	0.0000321876
Manihot esculenta	scaffold00560	17	CH_mes_42	4	4	0.00000000186971
Oryza sativa ssp. japonica	1	17	CH_osa_180	3	3	0.000000701417
Oryza sativa ssp. japonica	12	17	CH_osa_81	5	19	0.000000000287543
Populus trichocarpa	Chr09	17	CH_ptr_148	4	4	0.00000000274025
Populus trichocarpa	Chr13	17	CH_ptr_147	4	4	0.00000000274025
Prunus persica	scaffold_5	17	CH_ppe_80	6	14	0.0000000000006568
Solanum lycopersicum	ch10	17	CH_sly_197	3	3	0.000000417935
Vitis vinifera	chr3	17	CH_vvi_48	7	9	4.25447e-17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V