PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00001	17	CH_csi_97	3	3	0.0000024544
Citrus sinensis	scaffold00096	17	CH_csi_38	4	4	0.0000000010032
Eucalyptus grandis	scaffold_5	17	CH_egr_70	8	11	1.59263e-22
Glycine max	Gm07	17	CH_gma_82	4	4	0.0000000000505046
Gossypium raimondii	Chr03	17	CH_gra_88	4	4	0.000000000058248
Malus domestica	7	17	CH_mdo_290	3	32	0.000553338
Manihot esculenta	scaffold03942	17	CH_mes_86	3	3	0.00000076646
Oryza sativa ssp. japonica	4	17	CH_osa_75	4	8	0.000000000145016
Prunus persica	scaffold_2	17	CH_ppe_32	8	19	3.09468e-19
Ricinus communis	30146	17	CH_rco_121	3	3	0.00000121506
Ricinus communis	30174	17	CH_rco_63	4	5	0.00000000178948
Solanum lycopersicum	ch03	17	CH_sly_180	3	3	0.000000174139
Zea mays	10	17	CH_zma_43	4	8	0.0000000018692

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V