PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_176	4	38	0.000000233065
Brassica rapa	A01	17	CH_bra_126	4	24	0.0000039099
Brassica rapa	A03	17	CH_bra_277	3	16	0.000754271
Capsella rubella	scaffold_3	17	CH_cru_293	3	34	0.000521362
Eucalyptus grandis	scaffold_5	17	CH_egr_852	2	2	0.000879404
Eucalyptus grandis	scaffold_6	17	CH_egr_851	2	2	0.000879404
Glycine max	Gm08	17	CH_gma_37	6	8	7.5848e-17
Gossypium raimondii	Chr10	17	CH_gra_158	3	3	0.000000517353
Manihot esculenta	scaffold06700	17	CH_mes_221	2	2	0.000573121
Oryza sativa ssp. japonica	4	17	CH_osa_398	2	2	0.000537625
Populus trichocarpa	Chr03	17	CH_ptr_218	3	4	0.000000299758
Ricinus communis	29727	17	CH_rco_21	5	7	0.0000000000000878807
Solanum lycopersicum	ch03	17	CH_sly_42	5	5	0.00000000000000462142
Zea mays	2	17	CH_zma_227	2	2	0.00030175

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V