PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013525
Description: ABC-2 type transporter

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00069	13	CH_atr_209	4	5	0.000000546102
Arabidopsis lyrata	scaffold_5	13	CH_aly_219	4	5	0.000000344731
Arabidopsis thaliana	3	13	CH_ath_211	4	5	0.000000353724
Brassica rapa	A04	13	CH_bra_141	4	4	0.000000155528
Capsella rubella	scaffold_5	13	CH_cru_228	4	5	0.000000608881
Eucalyptus grandis	scaffold_10	13	CH_egr_1056	5	24	0.000110522
Eucalyptus grandis	scaffold_8	13	CH_egr_275	8	12	0.0000000000000156823
Eucalyptus grandis	scaffold_9	13	CH_egr_519	5	5	0.00000000269863
Eucalyptus grandis	scaffold_9	13	CH_egr_1224	3	3	0.000487916
Fragaria vesca	scf0513168	13	CH_fve_390	4	12	0.000039046
Glycine max	Gm08	13	CH_gma_120	6	6	0.00000000000282027
Glycine max	Gm13	13	CH_gma_718	3	3	0.000407597
Glycine max	Gm13	13	CH_gma_127	7	13	0.00000000000895513
Gossypium raimondii	Chr01	13	CH_gra_510	3	3	0.000313233
Gossypium raimondii	Chr05	13	CH_gra_238	5	9	0.000000151185
Oryza sativa ssp. japonica	9	13	CH_osa_582	4	16	0.0000614797
Populus trichocarpa	Chr08	13	CH_ptr_645	3	3	0.000241175
Prunus persica	scaffold_3	13	CH_ppe_335	4	4	0.000000412775
Ricinus communis	29588	13	CH_rco_54	6	6	0.000000000000924218
Solanum tuberosum	chr05	13	CH_stu_257	6	8	0.0000000000492603
Solanum tuberosum	chr12	13	CH_stu_422	5	8	0.000000053159
Thellungiella parvula	ch5-1	13	CH_tpa_124	4	5	0.000000687263
Theobroma cacao	scaffold_5	13	CH_tca_270	4	4	0.000000300605
Vitis vinifera	chr4	13	CH_vvi_386	4	5	0.00000655237
Vitis vinifera	chr6	13	CH_vvi_273	6	19	0.000000223241
Vitis vinifera	chr9	13	CH_vvi_17	16	21	7.40845e-34
Vitis vinifera	chr6	14	CH_vvi_75	10	182	0.00000172576
Vitis vinifera	chr9	14	CH_vvi_17	16	21	7.40845e-34

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V