PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013320
Description: Concanavalin A-like lectin/glucanase, subgroup

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	13	CH_aly_428	5	6	0.000166194
Capsella rubella	scaffold_1	14	CH_cru_59	11	58	0.000341518
Eucalyptus grandis	scaffold_11	13	CH_egr_533	20	60	0.00000000410666
Eucalyptus grandis	scaffold_11	14	CH_egr_210	20	60	0.00000000410666
Eucalyptus grandis	scaffold_6	14	CH_egr_259	36	290	0.00010851
Eucalyptus grandis	scaffold_7	14	CH_egr_272	17	82	0.000943717
Fragaria vesca	LG2	13	CH_fve_472	11	65	0.000111514
Fragaria vesca	LG2	14	CH_fve_55	14	114	0.0000645327
Glycine max	Gm13	13	CH_gma_180	16	49	0.000000000356388
Glycine max	Gm17	13	CH_gma_259	8	9	0.000000030775
Glycine max	Gm08	14	CH_gma_78	12	57	0.00024155
Glycine max	Gm13	14	CH_gma_48	10	11	0.0000000000187984
Glycine max	Gm13	14	CH_gma_53	16	49	0.000000000356388
Glycine max	Gm17	14	CH_gma_69	17	105	0.0000120954
Gossypium raimondii	Chr02	13	CH_gra_189	15	49	0.00000000448376
Gossypium raimondii	Chr07	13	CH_gra_352	8	16	0.0000126691
Gossypium raimondii	Chr11	14	CH_gra_65	11	19	0.00000000157266
Medicago truncatula	chr5	13	CH_mtr_1012	6	11	0.00020781
Medicago truncatula	chr1	14	CH_mtr_175	15	147	0.00018798
Oryza sativa ssp. japonica	9	14	CH_osa_109	23	249	0.000000964417
Populus trichocarpa	Chr19	14	CH_ptr_100	27	225	0.00000127319
Prunus persica	scaffold_6	13	CH_ppe_567	5	5	0.000122732
Prunus persica	scaffold_6	13	CH_ppe_757	7	17	0.000890978
Prunus persica	scaffold_4	14	CH_ppe_71	34	296	0.0000000000508636
Prunus persica	scaffold_6	14	CH_ppe_86	13	39	0.000000023564
Ricinus communis	30169	13	CH_rco_87	9	11	0.000000000613379
Ricinus communis	30179	14	CH_rco_15	11	12	0.0000000000000543218
Solanum lycopersicum	ch05	13	CH_sly_125	11	18	0.00000000000610099
Solanum lycopersicum	ch05	14	CH_sly_50	11	18	0.00000000000610099
Solanum tuberosum	chr02	13	CH_stu_403	16	78	0.0000000214465
Solanum tuberosum	chr10	13	CH_stu_803	13	80	0.0000670673
Solanum tuberosum	chr10	14	CH_stu_136	14	82	0.00000807721
Theobroma cacao	scaffold_1	13	CH_tca_162	8	8	0.000000000979307
Theobroma cacao	scaffold_5	13	CH_tca_219	13	42	0.0000000514615
Theobroma cacao	scaffold_1	14	CH_tca_72	10	44	0.000539903
Theobroma cacao	scaffold_1	14	CH_tca_67	10	38	0.000115098
Theobroma cacao	scaffold_5	14	CH_tca_51	13	42	0.0000000514615
Zea mays	1	13	CH_zma_505	9	43	0.000581492
Zea mays	1	14	CH_zma_28	10	60	0.000932621

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V