PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013057
Description: Amino acid transporter, transmembrane

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00006	13	CH_atr_177	5	10	0.000000125394
Amborella trichopoda	scaffold00010	13	CH_atr_156	5	8	0.0000000279466
Amborella trichopoda	scaffold00071	13	CH_atr_74	6	7	0.00000000000595433
Amborella trichopoda	scaffold00166	13	CH_atr_501	3	4	0.000647388
Beta vulgaris	Bvchr2.sca001	13	CH_bvu_479	3	4	0.000689426
Beta vulgaris	Bvchr9.sca025	13	CH_bvu_351	3	3	0.000172615
Brassica rapa	A06	13	CH_bra_406	3	3	0.000315134
Brassica rapa	A09	13	CH_bra_405	3	3	0.000315134
Capsella rubella	scaffold_6	13	CH_cru_430	3	3	0.000171273
Carica papaya	supercontig_12	13	CH_cpa_122	4	5	0.000000905402
Carica papaya	supercontig_19	13	CH_cpa_296	3	3	0.000109854
Citrullus lanatus	Chr4	13	CH_cla_175	4	5	0.000000935532
Citrus sinensis	scaffold00023	13	CH_csi_274	3	3	0.000198792
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_455	3	4	0.000533009
Cucumis melo	CM3.5_scaffold00016	13	CH_cme_321	3	3	0.000133422
Eucalyptus grandis	scaffold_10	13	CH_egr_429	6	7	0.0000000000503288
Eucalyptus grandis	scaffold_3	13	CH_egr_858	4	5	0.0000063413
Eucalyptus grandis	scaffold_6	13	CH_egr_1234	3	3	0.000524047
Eucalyptus grandis	scaffold_6	13	CH_egr_1233	3	3	0.000524047
Eucalyptus grandis	scaffold_6	13	CH_egr_921	4	6	0.0000189869
Eucalyptus grandis	scaffold_8	13	CH_egr_153	10	14	1.97892e-19
Eucalyptus grandis	scaffold_8	14	CH_egr_122	10	14	1.97892e-19
Fragaria vesca	LG2	13	CH_fve_170	5	6	0.00000000343722
Fragaria vesca	LG2	13	CH_fve_560	3	3	0.000193565
Fragaria vesca	LG5	13	CH_fve_559	3	3	0.000193565
Fragaria vesca	scf0513160	13	CH_fve_558	3	3	0.000193565
Glycine max	Gm02	13	CH_gma_822	3	3	0.000979932
Glycine max	Gm08	13	CH_gma_823	3	3	0.000979932
Glycine max	Gm12	13	CH_gma_821	3	3	0.000979932
Glycine max	Gm17	13	CH_gma_819	3	3	0.000979932
Glycine max	Gm18	13	CH_gma_820	3	3	0.000979932
Malus domestica	10	13	CH_mdo_83	5	7	0.00000000461684
Medicago truncatula	chr1	13	CH_mtr_520	4	4	0.000000368124
Medicago truncatula	chr1	13	CH_mtr_746	5	23	0.0000182054
Medicago truncatula	chr3	13	CH_mtr_1023	3	3	0.000242404
Medicago truncatula	chr3	13	CH_mtr_1024	3	3	0.000242404
Medicago truncatula	chr3	13	CH_mtr_479	5	10	0.000000138586
Medicago truncatula	chr6	13	CH_mtr_857	4	10	0.0000767428
Medicago truncatula	chr6	13	CH_mtr_970	4	12	0.000180453
Oryza sativa ssp. japonica	1	13	CH_osa_404	4	6	0.00000176408
Oryza sativa ssp. japonica	4	13	CH_osa_605	3	3	0.000100063
Oryza sativa ssp. japonica	6	13	CH_osa_761	3	4	0.000399892
Populus trichocarpa	Chr04	13	CH_ptr_689	3	3	0.000317429
Populus trichocarpa	Chr06	13	CH_ptr_454	4	6	0.0000092197
Populus trichocarpa	Chr11	13	CH_ptr_453	4	6	0.0000092197
Prunus persica	scaffold_1	13	CH_ppe_342	4	4	0.000000548023
Prunus persica	scaffold_3	13	CH_ppe_635	3	3	0.000266733
Prunus persica	scaffold_8	13	CH_ppe_396	4	5	0.00000273559
Solanum lycopersicum	ch03	13	CH_sly_574	3	3	0.000160523
Solanum lycopersicum	ch07	13	CH_sly_575	3	3	0.000160523
Solanum tuberosum	chr03	13	CH_stu_1010	4	15	0.000443394
Solanum tuberosum	chr03	13	CH_stu_475	4	4	0.000000329774
Solanum tuberosum	chr05	13	CH_stu_915	3	3	0.000193071
Solanum tuberosum	chr07	13	CH_stu_914	3	3	0.000193071
Theobroma cacao	scaffold_10r	13	CH_tca_597	3	4	0.000481721
Theobroma cacao	scaffold_2	13	CH_tca_596	3	4	0.000481721
Vitis vinifera	chr1	13	CH_vvi_185	7	22	0.00000000282473
Vitis vinifera	chr14	13	CH_vvi_430	4	7	0.0000407152
Vitis vinifera	chr19	13	CH_vvi_635	3	3	0.000464484
Vitis vinifera	chr19	13	CH_vvi_324	4	4	0.00000117038
Vitis vinifera	chr4	13	CH_vvi_212	5	6	0.0000000173947
Vitis vinifera	chr1	14	CH_vvi_86	10	250	0.0000287108
Zea mays	10	13	CH_zma_259	4	7	0.0000136843
Zea mays	6	13	CH_zma_34	7	9	0.0000000000000674007

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V