PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004864
Description: Late embryogenesis abundant protein, LEA-14

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00030	13	CH_atr_124	5	7	0.00000000231254
Amborella trichopoda	scaffold00040	13	CH_atr_311	3	3	0.0000669043
Arabidopsis thaliana	2	13	CH_ath_408	3	3	0.0000919136
Carica papaya	supercontig_104	13	CH_cpa_141	4	8	0.00000336007
Carica papaya	supercontig_11	13	CH_cpa_195	3	3	0.0000413544
Citrullus lanatus	Chr10	13	CH_cla_57	6	6	0.000000000000818949
Citrus sinensis	scaffold00010	13	CH_csi_65	5	5	0.000000000438182
Citrus sinensis	scaffold00018	13	CH_csi_267	3	3	0.00013169
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_30	8	8	1.04636e-18
Eucalyptus grandis	scaffold_10	13	CH_egr_363	6	6	0.00000000000335003
Eucalyptus grandis	scaffold_10	13	CH_egr_1195	3	3	0.000359981
Eucalyptus grandis	scaffold_11	13	CH_egr_566	5	6	0.00000000967268
Eucalyptus grandis	scaffold_11	13	CH_egr_739	4	4	0.00000076773
Eucalyptus grandis	scaffold_5	13	CH_egr_19	17	18	6.89863e-41
Eucalyptus grandis	scaffold_5	14	CH_egr_22	17	18	6.89863e-41
Fragaria vesca	LG5	13	CH_fve_2	22	27	1.28649e-50
Fragaria vesca	LG6	13	CH_fve_363	5	18	0.0000170275
Fragaria vesca	LG7	13	CH_fve_162	5	5	0.00000000203579
Fragaria vesca	LG7	13	CH_fve_617	3	3	0.00040916
Fragaria vesca	LG5	14	CH_fve_2	22	27	1.28649e-50
Glycine max	Gm03	13	CH_gma_83	7	8	0.0000000000000450089
Glycine max	Gm07	13	CH_gma_720	3	3	0.000419243
Glycine max	Gm13	13	CH_gma_719	3	3	0.000419243
Glycine max	Gm19	13	CH_gma_358	4	4	0.00000081441
Gossypium raimondii	Chr06	13	CH_gra_531	3	3	0.000365346
Lotus japonicus	chr1	13	CH_lja_130	3	3	0.000005532
Malus domestica	12	13	CH_mdo_625	3	5	0.000933353
Malus domestica	14	13	CH_mdo_205	4	6	0.00000174475
Malus domestica	7	13	CH_mdo_624	3	5	0.000933353
Manihot esculenta	scaffold02892	13	CH_mes_314	3	3	0.000281414
Medicago truncatula	chr2	13	CH_mtr_1086	3	4	0.000308882
Medicago truncatula	chr3	13	CH_mtr_859	3	3	0.0000772812
Medicago truncatula	chr6	13	CH_mtr_954	4	16	0.000143132
Medicago truncatula	chr7	13	CH_mtr_142	8	19	0.0000000000000056963
Prunus persica	scaffold_2	13	CH_ppe_229	5	5	0.00000000195617
Prunus persica	scaffold_4	13	CH_ppe_652	3	3	0.000373403
Prunus persica	scaffold_5	13	CH_ppe_714	4	13	0.000605708
Prunus persica	scaffold_6	13	CH_ppe_230	5	5	0.00000000195617
Prunus persica	scaffold_7	13	CH_ppe_67	8	8	2.07951e-17
Prunus persica	scaffold_7	13	CH_ppe_640	4	11	0.000280596
Prunus persica	scaffold_7	14	CH_ppe_73	12	161	0.000000000120824
Solanum lycopersicum	ch01	13	CH_sly_577	3	4	0.000166491
Solanum tuberosum	chr10	13	CH_stu_434	4	4	0.0000000903429
Theobroma cacao	scaffold_3	13	CH_tca_85	6	6	0.0000000000005968
Theobroma cacao	scaffold_3	13	CH_tca_366	4	7	0.000008281
Vitis vinifera	chr15	13	CH_vvi_208	4	4	0.0000000161472

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V