PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	13	CH_aly_327	3	3	0.0000155471
Arabidopsis thaliana	2	13	CH_ath_299	3	3	0.00000818379
Beta vulgaris	Bvchr9.sca026	13	CH_bvu_9	8	8	1.86563e-21
Brassica rapa	A03	13	CH_bra_29	6	8	0.000000000000139432
Capsella rubella	scaffold_3	13	CH_cru_325	3	3	0.0000154757
Chlamydomonas reinhardtii	chromosome_6	13	CH_cre_59	5	51	0.00000560565
Citrullus lanatus	Chr2	13	CH_cla_10	10	11	1.69021e-27
Citrullus lanatus	Chr2	14	CH_cla_10	10	11	1.69021e-27
Eucalyptus grandis	scaffold_4	13	CH_egr_69	13	25	4.53858e-28
Eucalyptus grandis	scaffold_4	14	CH_egr_68	13	25	4.53858e-28
Fragaria vesca	LG2	13	CH_fve_33	7	10	8.46729e-18
Glycine max	Gm15	13	CH_gma_68	6	7	0.0000000000000011024
Gossypium raimondii	Chr02	13	CH_gra_319	3	3	0.00000414932
Lotus japonicus	chr2	13	CH_lja_259	2	2	0.000403361
Malus domestica	5	13	CH_mdo_329	3	12	0.0000589942
Oryza sativa ssp. japonica	4	13	CH_osa_262	5	14	0.0000000181513
Populus trichocarpa	Chr09	13	CH_ptr_64	7	9	2.78339e-19
Prunus persica	scaffold_8	13	CH_ppe_302	4	4	0.000000113811
Prunus persica	scaffold_8	13	CH_ppe_2	26	27	5.80938e-73
Prunus persica	scaffold_8	14	CH_ppe_3	26	27	5.80938e-73
Solanum tuberosum	chr09	13	CH_stu_136	7	12	0.00000000000000188172
Thellungiella parvula	ch3-6	13	CH_tpa_184	3	4	0.0000309061
Vitis vinifera	chr3	13	CH_vvi_45	8	16	2.7302e-20
Zea mays	7	13	CH_zma_207	3	3	0.0000025799

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V