PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009611
Description: response to wounding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	6	CH_aly_65	10	81	0.0000556168
Beta vulgaris	Bvchr5.sca024	5	CH_bvu_15	10	37	0.00000000440078
Beta vulgaris	Bvchr5.sca024	6	CH_bvu_19	10	37	0.00000000440078
Capsella rubella	scaffold_4	1	CH_cru_138	3	5	0.0000192131
Capsella rubella	scaffold_8	1	CH_cru_25	5	5	0.000000000000201621
Citrullus lanatus	Chr5	1	CH_cla_53	4	7	0.00000000453009
Cucumis melo	CM3.5_scaffold00006	1	CH_cme_17	6	10	3.47668e-16
Eucalyptus grandis	scaffold_9	5	CH_egr_122	19	179	0.0000000000244745
Eucalyptus grandis	scaffold_9	6	CH_egr_148	19	179	0.0000000000261396
Glycine max	Gm20	1	CH_gma_133	3	3	0.000000246425
Gossypium raimondii	Chr07	1	CH_gra_67	4	4	0.0000000000960951
Gossypium raimondii	Chr09	1	CH_gra_121	3	3	0.000000513848
Medicago truncatula	chr1	1	CH_mtr_365	3	8	0.0000225964
Medicago truncatula	chr3	1	CH_mtr_202	4	13	0.0000000442353
Oryza sativa ssp. japonica	12	1	CH_osa_220	3	4	0.0000135253
Oryza sativa ssp. japonica	2	1	CH_osa_61	5	6	0.00000000000245411
Populus trichocarpa	Chr10	1	CH_ptr_32	7	7	1.39766e-19
Populus trichocarpa	Chr16	1	CH_ptr_116	4	4	0.00000000221799
Populus trichocarpa	Chr10	5	CH_ptr_35	16	53	1.72832e-16
Populus trichocarpa	Chr10	6	CH_ptr_44	16	53	1.72832e-16
Prunus persica	scaffold_1	1	CH_ppe_35	6	10	0.00000000000000193075
Ricinus communis	29883	1	CH_rco_60	3	3	0.00000005786
Solanum lycopersicum	ch09	1	CH_sly_3	14	14	7.519e-42
Solanum lycopersicum	ch09	4	CH_sly_3	14	14	7.519e-42
Solanum tuberosum	chr09	1	CH_stu_36	8	8	1.2433e-22
Solanum tuberosum	chr10	1	CH_stu_174	4	4	0.00000000331343
Solanum tuberosum	chr03	2	CH_stu_425	4	4	0.000104601
Solanum tuberosum	chr03	3	CH_stu_585	4	4	0.000106223
Zea mays	1	1	CH_zma_54	4	4	0.000000047097
Zea mays	1	1	CH_zma_45	5	10	0.0000000115924
Zea mays	4	1	CH_zma_187	3	4	0.00018714
Zea mays	5	1	CH_zma_16	8	14	1.11137e-16
Zea mays	6	1	CH_zma_64	4	5	0.000000235294
Zea mays	UNKNOWN	1	CH_zma_84	4	8	0.00000328612

Available child term results

GO term	Description	Number of clusters
GO:0006953	acute-phase response	1
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	8
GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2
GO:0016068	type I hypersensitivity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V