Oryza sativa ssp. japonica

The rice genome was sequenced because of it's major importance in the world food industry and it's relatively small genome size. Since the first sequenced plant genome (Arabidopsis thalia) was a dicotylous plant it made sense to sequence a monocot next to have a broad taxonomix sampling. Unlike many of the recently sequenced genomes the sequencing has been done using a BAC-by-BAC approach a very costly a labour intensive procedure. But this yields a very high quality genome that can be assembled into chromosomes.

Publication:
The map-based sequence of the rice genome.

Info and Links

Source JGI v7.0
PLAZA identifier osa
NCBI link Oryza sativa ssp. japonica
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 2110, showing 20 records out of 42189 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
LOC_Os01g51770LOC_Os01g51770.12977048129773245-Chr1codingHOM04x5M000536ORTHO04x5M000497
LOC_Os01g19860LOC_Os01g19860.11126417011266136-Chr1codingHOM04x5M002332ORTHO04x5M002843
LOC_Os01g25470LOC_Os01g25470.11444271714444896-Chr1codingHOM04x5M000216ORTHO04x5M000140
LOC_Os01g04760LOC_Os01g04760.121627232162971-Chr1codingOrphan GeneOrphan Gene
LOC_Os01g04660LOC_Os01g04660.120976772100391+Chr1codingHOM04x5M000803ORTHO04x5M000625
LOC_Os01g45710LOC_Os01g45710.12595264125954080+Chr1codingOrphan GeneOrphan Gene
LOC_Os01g39150LOC_Os01g39150.12203683022037585+Chr1codingHOM04x5M000095ORTHO04x5M000088
LOC_Os01g27150LOC_Os01g27150.21513150015139267-Chr1codingHOM04x5M000423ORTHO04x5M001504
LOC_Os01g29260LOC_Os01g29260.11640062916403593+Chr1codingHOM04x5M000960ORTHO04x5M000697
LOC_Os01g31820LOC_Os01g31820.11743286217433638+Chr1codingOrphan GeneOrphan Gene
LOC_Os01g56290LOC_Os01g56290.13242463332426449+Chr1codingHOM04x5M005974ORTHO04x5M007317
LOC_Os01g72210LOC_Os01g72210.24187047141873654+Chr1codingHOM04x5M000337ORTHO04x5M000227
LOC_Os01g53560LOC_Os01g53560.13075350930760952+Chr1codingHOM04x5M005541ORTHO04x5M006215
LOC_Os01g12680LOC_Os01g12680.469913546993431+Chr1codingHOM04x5M000498ORTHO04x5M000485
LOC_Os01g70000LOC_Os01g70000.14049405440495520+Chr1codingHOM04x5M022318ORTHO04x5M021607
LOC_Os01g50320LOC_Os01g50320.12888555428890711+Chr1codingHOM04x5M005126ORTHO04x5M006045
LOC_Os01g52760LOC_Os01g52760.13035182930353432+Chr1codingHOM04x5M007156ORTHO04x5M008949
LOC_Os01g61720LOC_Os01g61720.33570986035712378-Chr1codingHOM04x5M000356ORTHO04x5M001432
LOC_Os01g57066LOC_Os01g57066.13295731732962793+Chr1codingHOM04x5M002140ORTHO04x5M002238
LOC_Os01g55470LOC_Os01g55470.13195749931961019-Chr1codingHOM04x5M000190ORTHO04x5M000891