Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
The genome of black cottonwood, Populus trichocarpa.

Info and Links

Source JGI v3.1
PLAZA identifier ptr
NCBI link Populus trichocarpa
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 2148, showing 20 records out of 42950 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
Potri.T086001Potri.T086001.1115742117216-scaffold_99codingHOM04x5M004661ORTHO04x5M005558
Potri.T086100Potri.T086100.4120870122267-scaffold_99codingHOM04x5M001741ORTHO04x5M000157
Potri.T042650Potri.T042650.11382067+scaffold_99codingHOM04x5M000121ORTHO04x5M000054
Potri.T085500Potri.T085500.22677330624-scaffold_99codingHOM04x5M001741ORTHO04x5M000157
Potri.T085300Potri.T085300.11678718980+scaffold_99codingHOM04x5M006651ORTHO04x5M008516
Potri.T085800Potri.T085800.1105362109444-scaffold_99codingHOM04x5M000343ORTHO04x5M000157
Potri.T085900Potri.T085900.2113735114385+scaffold_99codingHOM04x5M006651ORTHO04x5M008516
Potri.T085600Potri.T085600.16393064130+scaffold_99codingOrphan GeneOrphan Gene
Potri.T085700Potri.T085700.18660788283-scaffold_99codingHOM04x5M001741ORTHO04x5M000157
Potri.T085400Potri.T085400.11981521890-scaffold_99codingHOM04x5M004661ORTHO04x5M005558
Potri.T178700Potri.T178700.220063223+scaffold_1833codingHOM04x5M000055ORTHO04x5M000042
Potri.T085000Potri.T085000.2100492102498+scaffold_95codingHOM04x5M000018ORTHO04x5M000434
Potri.T084000Potri.T084000.134904186+scaffold_95codingHOM04x5M002319ORTHO04x5M006701
Potri.T084900Potri.T084900.19578998212+scaffold_95codingHOM04x5M000018ORTHO04x5M000434
Potri.T084100Potri.T084100.21385715498+scaffold_95codingHOM04x5M022912Orphan Gene
Potri.T084200Potri.T084200.11707119494+scaffold_95codingHOM04x5M000018ORTHO04x5M000434
Potri.T084300Potri.T084300.42181324230+scaffold_95codingHOM04x5M000018ORTHO04x5M000434
Potri.T085200Potri.T085200.1132043132456+scaffold_95codingHOM04x5M002519ORTHO04x5M002785
Potri.T084600Potri.T084600.16068861338+scaffold_95codingHOM04x5M000018ORTHO04x5M000434
Potri.T084400Potri.T084400.13897340285+scaffold_95codingHOM04x5M000018ORTHO04x5M000434