Child MapMan terms

Original MapMan term
12.5
Description
Chromatin organisation.DNA methylation
Type
mapman

MapMan description genes species aco aof ash ath atr bdi calsi cam cre egu hvu lpe mac mco mpo msi obr osa osaindica oth pab ped peq ppa ptr sbi sit sly smo spo ssp tae ttu vvi zjn zma zma-b104 zma-ph207 zosmarina
12.5.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway 1762 36 32 36 32 47 25 53 46 49 0 39 44 54 42 1 16 0 43 43 38 40 42 42 40 22 61 49 50 60 21 19 138 213 133 36 22 54 0 51 29
12.5.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation 455 37 8 14 5 11 8 12 25 13 1 9 7 28 9 1 6 0 12 15 14 6 7 13 8 5 12 13 16 13 8 4 23 52 31 12 6 10 0 10 8
12.5.1.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.auxiliary factor (MORC) 278 36 6 6 5 7 3 7 5 9 0 8 6 9 5 1 3 0 7 7 6 8 8 9 6 9 7 8 7 7 9 3 25 21 15 6 5 10 0 10 5
12.5.4 Chromatin organisation.DNA methylation.cytosine methylation reader activities 275 35 4 5 6 9 5 8 4 7 0 6 7 8 7 0 4 0 5 5 4 5 10 8 7 10 11 8 7 13 4 4 20 25 15 6 5 9 0 9 5
12.5.1.4 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP) 253 34 2 5 4 9 2 10 11 8 0 6 8 10 3 0 2 0 5 5 4 7 1 6 7 4 4 7 9 9 0 2 25 31 20 4 5 7 0 7 4
12.5.3 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation 206 36 4 7 5 8 5 6 3 4 0 7 4 10 5 1 3 0 6 7 7 5 3 7 5 4 9 8 7 8 4 1 9 17 10 6 2 4 0 3 2
12.5.2.4 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex 186 35 5 7 3 3 4 5 4 6 0 4 3 7 4 0 2 0 7 8 7 4 2 5 3 2 5 6 8 7 2 2 6 20 13 5 4 5 0 4 4
12.5.1.16 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex 164 31 3 3 5 6 1 5 4 5 0 4 5 5 5 0 0 0 4 4 5 4 1 5 3 0 8 5 6 8 0 2 14 19 11 2 0 5 0 4 3
12.5.4.1 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4|12) 160 35 2 3 3 5 2 6 3 5 0 3 5 6 4 0 3 0 4 4 4 4 3 4 3 1 5 6 5 6 2 1 10 19 11 2 3 5 0 5 3
12.5.1.15 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway 145 34 3 3 1 4 1 5 7 3 0 3 3 4 4 0 1 0 4 3 2 5 4 6 2 2 5 4 4 5 0 1 11 11 8 5 3 7 0 10 1
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1) 142 36 2 5 3 4 2 5 3 4 0 5 2 7 3 1 2 0 4 6 5 3 1 6 5 3 5 5 5 5 2 1 6 12 7 3 2 4 0 3 1
12.5.1.14 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR) 133 32 3 2 2 3 3 6 2 4 0 1 3 4 2 0 0 0 4 5 6 3 0 4 3 1 6 4 3 9 0 2 12 16 8 3 1 4 0 2 2
12.5.1.16.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex.methylated DNA binding component SUVH1/3 131 30 2 3 3 2 1 4 2 5 0 1 4 5 2 0 0 0 4 4 5 4 1 5 2 0 4 5 6 2 0 1 14 19 11 0 0 5 0 4 1
12.5.1.11 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.de novo DNA methylase (DRM) 123 34 1 2 1 2 1 2 1 5 0 3 5 8 3 0 1 0 1 1 1 1 5 1 2 0 1 3 2 3 1 1 10 28 20 1 1 2 0 2 1
12.5.1.7 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV-positioning factor (SHH) 123 33 2 2 3 2 2 2 3 2 0 0 3 2 2 0 2 0 2 3 1 2 9 0 4 1 4 3 3 4 4 2 9 18 13 3 1 4 0 3 3
12.5.1.13 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO) 122 32 3 3 2 4 1 3 4 3 0 3 2 4 3 0 3 0 3 3 4 2 0 4 2 2 5 4 4 5 0 1 7 18 8 4 0 3 0 2 3
12.5.2.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT) 111 33 2 4 1 3 2 4 2 3 0 2 1 14 2 0 2 0 2 3 3 1 0 3 3 1 2 3 3 3 2 1 9 14 8 4 0 1 0 2 1
12.5.2.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET) 104 36 1 2 1 4 1 2 18 3 1 3 3 4 2 0 1 0 2 2 2 1 3 4 1 1 3 2 3 1 2 1 5 9 5 3 2 2 0 2 2
12.5.4.3 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD10-11) 103 34 2 2 3 2 2 2 1 2 0 3 2 2 3 0 1 0 1 1 0 1 3 4 4 9 4 2 2 5 2 3 10 6 4 3 2 4 0 4 2
12.5.1.15.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD) 101 34 2 2 1 2 1 4 2 2 0 2 2 3 4 0 1 0 3 2 1 4 1 6 2 2 3 3 3 2 0 1 7 8 6 2 3 5 0 8 1
12.5.1.3 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.stabilization factor (SGS3) 88 33 1 2 2 1 3 1 1 3 0 2 2 1 3 0 1 0 3 2 2 1 9 2 2 1 11 2 2 2 0 1 5 6 5 1 0 4 0 3 1
12.5.2.4.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component AIPP1/EDM3 86 34 2 4 1 1 2 2 1 3 0 1 2 3 1 0 1 0 3 4 4 2 1 2 1 2 1 2 4 3 2 0 2 11 7 1 3 3 0 3 1
12.5.1.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.methyl-DNA-binding factor (SUVH2|9) 79 30 2 1 3 2 1 3 3 2 0 2 2 1 3 0 0 0 2 2 2 0 1 3 3 0 2 2 2 2 0 1 7 12 7 1 2 1 0 0 2
12.5.1.14.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DRD1 71 31 1 1 1 1 1 4 1 2 0 0 2 3 1 0 0 0 3 4 4 1 0 3 1 1 2 2 2 1 0 1 5 10 6 1 1 2 0 2 1
12.5.3.2 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex 64 28 2 2 2 4 3 1 0 0 0 2 2 3 2 0 1 0 2 1 2 2 2 1 0 1 4 3 2 3 2 0 3 5 3 3 0 0 0 0 1
12.5.1.8 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.endoribonuclease (DCL3) 61 30 2 2 1 1 1 3 2 1 0 2 0 2 2 0 2 0 2 2 1 2 0 0 1 1 1 2 2 1 5 0 5 6 4 1 0 1 0 2 1
12.5.2.1 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.chromatin remodeling factor (DDM1) 54 28 0 1 0 1 1 1 1 1 0 0 0 3 1 1 1 0 1 2 2 0 2 1 1 1 2 2 2 2 2 0 3 9 5 0 0 2 0 2 1
12.5.2.4.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component EDM2 52 29 2 2 1 1 1 2 1 2 0 1 0 2 1 0 1 0 3 3 2 1 0 1 1 0 1 2 3 2 0 1 1 6 4 2 0 1 0 0 1
12.5.2.4.1 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component ASI1/IBM2 48 32 1 1 1 1 1 1 2 1 0 2 1 2 2 0 0 0 1 1 1 1 1 2 1 0 3 2 1 2 0 1 3 3 2 2 1 1 0 1 2
12.5.3.2.2 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.component IDM1 47 25 2 2 2 1 1 1 0 0 0 2 2 3 2 0 0 0 2 1 2 2 1 1 0 0 1 3 2 1 0 0 3 5 3 1 0 0 0 0 1
12.5.1.6 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV/V auxiliary factor (RDM4) 46 35 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 3 2 1 2 1 0 1 1
12.5.1.15.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.siRNA-binding factor (AGO2) 44 24 1 1 0 2 0 1 5 1 0 1 1 1 0 0 0 0 1 1 1 1 3 0 0 0 2 1 1 3 0 0 4 3 2 3 0 2 0 2 0
12.5.1.9 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.ssRNA polymerase (RDR2) 43 28 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 0 1 1 1 1 0 0 1 0 1 1 1 1 0 1 4 9 5 1 0 1 0 1 1
12.5.1.12 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.ribonuclease (RTL2) 36 21 0 1 0 1 2 2 1 0 0 2 1 0 3 0 0 0 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 9 3 1 1 1 0 1 0
12.5.1.14.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DMS3 35 27 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 0 2 1 1 3 0 0 3 3 2 1 0 1 0 0 0
12.5.1.5 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-V auxiliary factor (KTF1/SPT5L) 35 29 1 1 0 1 1 1 1 1 0 1 1 1 1 0 0 0 1 1 1 1 1 1 1 0 2 1 1 1 0 1 0 3 2 1 0 2 0 2 1
12.5.1.10 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RDR2-polymerase accessory protein (CLSY1/2) 34 26 1 1 1 2 1 1 0 1 0 0 1 1 1 0 0 0 1 1 1 0 2 0 1 0 2 1 2 1 0 0 2 3 2 1 1 1 0 1 0
12.5.1.16.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex.chaperone component DNAJ1/2 33 14 1 0 2 4 0 1 2 0 0 3 1 0 3 0 0 0 0 0 0 0 0 0 1 0 4 0 0 6 0 1 0 0 0 2 0 0 0 0 2
12.5.1.14.3 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1 27 17 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 2 1 0 5 0 1 4 3 0 1 0 1 0 0 1
12.5.3.2.3 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.component IDM2|IDM3 13 9 0 0 0 2 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0
12.5.4.2 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD5-6) 12 6 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0
12.5.3.2.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.methylation reader component MBD7 4 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0