Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G32880	Arabidopsis thaliana	0.0	1734	834	100.00
ATR_00056G00590	Amborella trichopoda	0.0	1319	834	75.66
AT1G52150	Arabidopsis thaliana	0.0	1298	835	76.17
ATR_00155G00440	Amborella trichopoda	0.0	1156	842	67.58
ATR_00148G00150	Amborella trichopoda	0.0	1156	846	66.90
OS03G43930	Oryza sativa	0.0	1155	851	66.16
OS12G41860	Oryza sativa	0.0	1112	840	64.88
AT2G34710	Arabidopsis thaliana	0.0	1087	838	64.44
OS03G01890	Oryza sativa	0.0	1068	842	62.23
OS10G33960	Oryza sativa	0.0	1068	838	62.41
AT5G60690	Arabidopsis thaliana	0.0	1049	848	62.03
AT1G30490	Arabidopsis thaliana	0.0	1043	845	62.01
PP00015G00030	Physcomitrella patens	0.0	979	842	58.08
PP00070G00810	Physcomitrella patens	0.0	950	881	54.60
PP00188G00560	Physcomitrella patens	0.0	948	882	54.31
PP00055G00450	Physcomitrella patens	0.0	943	891	54.55
PP00067G00470	Physcomitrella patens	0.0	925	878	53.87
OS01G10320	Oryza sativa	0.0	771	648	58.33
OS06G50724	Oryza sativa	1e-75	256	244	53.28
OS06G50560	Oryza sativa	2e-72	253	244	53.28
OS06G50510	Oryza sativa	2e-71	254	244	53.28
PP00209G00060	Physcomitrella patens	8e-34	143	769	23.41
PP00084G01160	Physcomitrella patens	2e-32	139	786	22.65
PP00173G00480	Physcomitrella patens	9e-32	137	770	22.99
OS06G50679	Oryza sativa	2e-26	112	154	42.21
OS08G04190	Oryza sativa	1e-22	107	650	23.23
PP00059G00720	Physcomitrella patens	3e-22	106	769	21.98
AT4G21750	Arabidopsis thaliana	5e-22	105	763	21.76
ATR_00004G02640	Amborella trichopoda	1e-21	104	749	21.36
AT1G79840	Arabidopsis thaliana	3e-20	100	669	21.82
OS06G10600	Oryza sativa	3e-18	93.6	557	24.06
ATR_00109G00560	Amborella trichopoda	7e-18	92.4	728	21.70
AT4G00730	Arabidopsis thaliana	4e-17	90.1	663	23.23
AT4G04890	Arabidopsis thaliana	3e-16	87.0	506	23.72
OS03G55990	Oryza sativa	1e-15	82.4	59	67.80
ATR_00024G00470	Amborella trichopoda	4e-15	83.6	706	20.96
AT1G17920	Arabidopsis thaliana	1e-14	82.4	685	22.48
AT5G52170	Arabidopsis thaliana	1e-14	81.6	646	22.29
OS08G32990	Oryza sativa	5e-13	73.9	51	66.67
OS01G57890	Oryza sativa	6e-13	76.6	469	21.54
AT3G03260	Arabidopsis thaliana	3e-12	74.3	728	22.12
OS04G48070	Oryza sativa	2e-10	68.9	129	30.23
OS08G08820	Oryza sativa	2e-10	68.6	429	22.61
AT1G05230	Arabidopsis thaliana	2e-10	68.6	504	20.63
OS09G35760	Oryza sativa	3e-10	68.2	95	36.84
OS10G42490	Oryza sativa	3e-10	67.8	103	33.98
AT1G73360	Arabidopsis thaliana	1e-09	66.2	253	26.88
AT5G17320	Arabidopsis thaliana	1e-09	65.9	109	33.94
OS08G32080	Oryza sativa	3e-09	63.9	149	30.87
OS08G32085	Oryza sativa	3e-09	63.9	149	30.87
OS04G53540	Oryza sativa	3e-09	64.7	80	38.75
OS02G45250	Oryza sativa	4e-09	64.3	85	37.65
OS02G49700	Oryza sativa	5e-09	62.8	98	37.76
ATR_00048G00420	Amborella trichopoda	6e-09	63.9	397	22.67
AT4G25530	Arabidopsis thaliana	6e-09	63.5	461	22.34
AT3G61150	Arabidopsis thaliana	1e-08	62.8	85	37.65
AT2G32370	Arabidopsis thaliana	2e-08	62.0	104	32.69
OS01G55549	Oryza sativa	5e-08	60.8	357	22.69
PP00325G00280	Physcomitrella patens	3e-07	57.4	112	32.14
AT5G46880	Arabidopsis thaliana	2e-06	56.2	97	30.93
ATR_00006G02980	Amborella trichopoda	5e-06	52.8	98	33.67
OS03G07450	Oryza sativa	7e-06	53.1	94	32.98

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment