Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G57260	Arabidopsis thaliana	0.0	701	340	100.00
AT3G57240	Arabidopsis thaliana	3e-138	403	320	65.62
AT3G57270	Arabidopsis thaliana	7e-133	389	319	59.56
AT4G16260	Arabidopsis thaliana	3e-111	334	332	50.30
OS01G58730	Oryza sativa	9e-106	320	311	52.41
OS01G71810	Oryza sativa	4e-98	300	315	49.84
ATR_00053G01320	Amborella trichopoda	2e-97	298	304	48.68
OS05G41610	Oryza sativa	2e-97	299	340	47.06
OS01G71830	Oryza sativa	3e-97	298	314	49.68
OS01G71340	Oryza sativa	6e-97	297	309	51.13
OS01G71820	Oryza sativa	1e-96	296	315	49.52
ATR_00053G01270	Amborella trichopoda	5e-96	294	306	50.65
OS05G31140	Oryza sativa	2e-93	288	308	46.43
OS01G71670	Oryza sativa	3e-92	285	344	46.80
OS01G71400	Oryza sativa	5e-92	285	331	46.53
OS01G71680	Oryza sativa	8e-91	282	313	48.24
OS01G71474	Oryza sativa	1e-90	282	343	44.61
OS01G71380	Oryza sativa	1e-89	278	331	47.13
ATR_00053G01260	Amborella trichopoda	2e-89	278	317	45.11
OS01G71350	Oryza sativa	4e-88	275	312	48.72
OS01G71860	Oryza sativa	4e-88	283	309	48.87
ATR_00107G00020	Amborella trichopoda	1e-87	273	306	46.73
OS01G51570	Oryza sativa	3e-87	273	336	48.81
ATR_00053G01280	Amborella trichopoda	2e-86	269	304	47.04
OS01G71410	Oryza sativa	8e-86	270	309	45.63
OS01G71930	Oryza sativa	9e-85	275	311	45.66
ATR_00156G00070	Amborella trichopoda	9e-82	258	314	44.27
AT5G56590	Arabidopsis thaliana	2e-77	253	323	40.25
OS01G71690	Oryza sativa	5e-76	255	308	48.70
OS01G53750	Oryza sativa	1e-74	244	322	38.82
ATR_00056G01290	Amborella trichopoda	2e-73	243	323	38.39
AT5G20330	Arabidopsis thaliana	3e-72	234	337	39.76
AT5G20340	Arabidopsis thaliana	1e-71	233	310	39.68
PP00026G00780	Physcomitrella patens	2e-71	232	312	39.74
AT5G20390	Arabidopsis thaliana	1e-69	227	318	37.74
AT2G16230	Arabidopsis thaliana	1e-69	232	318	40.57
PP00150G00090	Physcomitrella patens	3e-69	231	335	37.01
PP00026G00770	Physcomitrella patens	9e-69	226	315	39.37
AT1G77780	Arabidopsis thaliana	2e-67	222	333	37.24
AT2G05790	Arabidopsis thaliana	7e-67	224	323	39.94
AT1G33220	Arabidopsis thaliana	1e-66	219	332	36.75
AT4G26830	Arabidopsis thaliana	2e-66	222	339	36.87
PP00190G00160	Physcomitrella patens	3e-66	221	338	37.57
PP00070G01270	Physcomitrella patens	5e-66	221	344	38.37
PP00268G00250	Physcomitrella patens	8e-66	220	324	38.27
PP00284G00010	Physcomitrella patens	2e-65	218	321	39.56
PP00040G00940	Physcomitrella patens	2e-65	218	322	37.89
PP00051G00310	Physcomitrella patens	3e-65	221	341	34.90
AT5G55180	Arabidopsis thaliana	4e-65	219	324	36.73
ATR_00112G00280	Amborella trichopoda	7e-65	218	342	38.30
PP00007G00270	Physcomitrella patens	7e-65	219	342	36.84
AT5G42720	Arabidopsis thaliana	1e-64	217	339	37.46
PP00312G00180	Physcomitrella patens	1e-64	219	340	37.94
AT3G07320	Arabidopsis thaliana	2e-64	217	327	35.47
OS09G36280	Oryza sativa	3e-64	213	318	37.42
AT4G34480	Arabidopsis thaliana	4e-64	218	339	38.64
OS04G33640	Oryza sativa	5e-64	214	357	34.17
OS02G53200	Oryza sativa	1e-63	216	325	39.38
OS03G12620	Oryza sativa	2e-63	214	333	38.74
AT1G77790	Arabidopsis thaliana	2e-63	211	333	35.74
AT3G15800	Arabidopsis thaliana	7e-63	211	324	37.35
AT2G26600	Arabidopsis thaliana	2e-62	210	323	35.29
OS03G46660	Oryza sativa	2e-62	213	343	34.69
AT2G01630	Arabidopsis thaliana	3e-62	213	320	38.75
AT4G29360	Arabidopsis thaliana	5e-62	213	339	35.40
AT5G20560	Arabidopsis thaliana	5e-62	207	327	35.47
OS06G34020	Oryza sativa	7e-62	210	344	37.21
PP00006G00160	Physcomitrella patens	8e-62	211	333	37.24
AT1G32860	Arabidopsis thaliana	8e-62	209	322	36.65
OS02G33000	Oryza sativa	1e-61	208	321	36.76
PP00270G00470	Physcomitrella patens	2e-61	211	324	36.73
ATR_00059G00370	Amborella trichopoda	2e-61	209	341	36.95
OS02G10660	Oryza sativa	3e-61	207	323	35.91
PP00197G00850	Physcomitrella patens	4e-61	207	346	36.71
ATR_00013G01290	Amborella trichopoda	4e-61	204	314	36.31
AT1G66250	Arabidopsis thaliana	4e-61	209	317	37.22
OS01G64170	Oryza sativa	5e-61	206	322	34.47
ATR_00053G01290	Amborella trichopoda	8e-61	200	214	48.13
PP00001G00220	Physcomitrella patens	8e-61	208	335	37.01
PP00218G00010	Physcomitrella patens	1e-60	208	329	36.47
ATR_00100G00050	Amborella trichopoda	3e-60	206	320	35.94
OS03G12140	Oryza sativa	3e-60	207	311	37.62
AT4G14080	Arabidopsis thaliana	3e-60	206	325	36.00
AT2G27500	Arabidopsis thaliana	3e-60	204	318	33.65
OS08G14700	Oryza sativa	2e-59	206	343	37.90
ATR_00009G03570	Amborella trichopoda	2e-59	204	340	36.47
OS07G35480	Oryza sativa	3e-59	205	359	37.33
PP00053G00310	Physcomitrella patens	4e-59	202	325	38.77
PP00098G00250	Physcomitrella patens	4e-59	204	341	36.95
ATR_00031G00240	Amborella trichopoda	2e-58	199	349	33.52
PP00085G00580	Physcomitrella patens	2e-58	202	340	35.59
OS01G71650	Oryza sativa	2e-58	194	228	46.49
PP00280G00250	Physcomitrella patens	2e-58	198	340	35.88
ATR_00060G01250	Amborella trichopoda	1e-57	201	339	35.99
AT3G23770	Arabidopsis thaliana	1e-57	200	328	34.76
OS07G35510	Oryza sativa	3e-57	201	343	37.03
AT4G18340	Arabidopsis thaliana	5e-57	196	340	34.71
ATR_00104G00300	Amborella trichopoda	6e-57	198	343	34.11
ATR_00117G00360	Amborella trichopoda	6e-57	197	335	34.63
AT1G30080	Arabidopsis thaliana	4e-56	194	340	35.00
OS07G07340	Oryza sativa	8e-56	195	320	33.75
PP00145G00590	Physcomitrella patens	3e-55	194	324	37.65
OS03G62860	Oryza sativa	3e-55	193	349	34.67
AT4G31140	Arabidopsis thaliana	3e-55	193	341	34.02
PP00389G00270	Physcomitrella patens	3e-55	192	292	36.99
AT5G24318	Arabidopsis thaliana	4e-55	192	340	35.88
OS08G41410	Oryza sativa	6e-55	193	328	37.20
ATR_00058G02370	Amborella trichopoda	6e-55	191	336	34.52
OS06G40490	Oryza sativa	3e-54	189	322	33.85
ATR_00117G00390	Amborella trichopoda	6e-54	190	325	32.92
AT3G24330	Arabidopsis thaliana	6e-54	190	343	33.82
ATR_00004G00660	Amborella trichopoda	8e-54	189	344	33.14
PP00334G00320	Physcomitrella patens	9e-54	187	321	36.14
AT5G42100	Arabidopsis thaliana	1e-53	188	321	36.14
OS07G35350	Oryza sativa	1e-53	190	363	34.71
AT5G58090	Arabidopsis thaliana	2e-53	188	325	36.00
OS03G14210	Oryza sativa	2e-53	187	328	36.28
OS06G39060	Oryza sativa	3e-53	188	308	35.06
PP00138G00240	Physcomitrella patens	3e-53	189	354	32.77
ATR_00078G00060	Amborella trichopoda	4e-53	186	348	33.33
OS07G38930	Oryza sativa	5e-53	187	355	32.11
AT5G18220	Arabidopsis thaliana	6e-53	187	336	32.14
ATR_00025G03070	Amborella trichopoda	7e-53	187	342	33.63
ATR_00061G01310	Amborella trichopoda	8e-53	186	321	35.83
ATR_00012G01410	Amborella trichopoda	1e-52	186	342	34.80
AT3G04010	Arabidopsis thaliana	5e-52	185	354	32.49
AT1G11820	Arabidopsis thaliana	6e-52	185	318	33.33
AT3G55430	Arabidopsis thaliana	6e-52	184	347	37.18
OS09G09980	Oryza sativa	8e-52	184	322	35.71
AT4G17180	Arabidopsis thaliana	1e-51	184	339	34.22
OS06G04080	Oryza sativa	1e-51	183	319	36.36
OS03G57880	Oryza sativa	2e-51	183	314	35.67
AT3G61810	Arabidopsis thaliana	2e-51	181	323	34.37
AT2G19440	Arabidopsis thaliana	6e-51	182	324	33.64
OS02G04670	Oryza sativa	7e-51	182	321	33.96
OS08G12800	Oryza sativa	8e-51	182	322	36.65
AT3G46570	Arabidopsis thaliana	1e-50	178	324	37.04
OS03G51240	Oryza sativa	1e-50	180	307	38.76
OS10G07290	Oryza sativa	6e-50	178	348	34.20
OS11G47820	Oryza sativa	1e-49	178	324	36.42
ATR_00037G01070	Amborella trichopoda	1e-49	178	314	35.35
ATR_00131G00420	Amborella trichopoda	1e-49	179	323	34.37
AT1G64760	Arabidopsis thaliana	3e-49	177	324	32.72
AT5G58480	Arabidopsis thaliana	5e-49	176	330	33.03
AT2G39640	Arabidopsis thaliana	2e-48	176	336	32.14
PP00157G00080	Physcomitrella patens	2e-48	175	327	32.72
OS11G36940	Oryza sativa	8e-48	173	328	32.62
OS07G35560	Oryza sativa	1e-47	175	365	33.70
AT3G13560	Arabidopsis thaliana	1e-47	173	321	33.64
OS08G23720	Oryza sativa	2e-47	172	323	34.67
ATR_00007G00030	Amborella trichopoda	3e-47	172	331	30.82
OS07G35520	Oryza sativa	3e-47	173	349	34.38
ATR_00022G02030	Amborella trichopoda	6e-47	171	363	31.13
AT5G20870	Arabidopsis thaliana	9e-47	171	317	35.96
OS07G13580	Oryza sativa	2e-46	170	343	35.86
OS07G32600	Oryza sativa	3e-46	170	321	36.76
OS03G18520	Oryza sativa	4e-46	169	322	35.71
PP00162G00140	Physcomitrella patens	9e-46	168	326	33.13
PP00197G00340	Physcomitrella patens	7e-45	166	352	30.68
OS03G27980	Oryza sativa	9e-45	165	317	35.02
OS09G32550	Oryza sativa	2e-44	164	331	32.33
AT5G64790	Arabidopsis thaliana	3e-44	164	341	31.09
ATR_00156G00080	Amborella trichopoda	1e-43	157	280	38.21
PP00014G00160	Physcomitrella patens	5e-43	160	347	31.70
PP00027G01390	Physcomitrella patens	1e-42	159	339	33.33
PP00054G00730	Physcomitrella patens	3e-42	158	340	31.18
OS03G45390	Oryza sativa	5e-42	157	326	33.13
PP00447G00070	Physcomitrella patens	3e-41	150	259	35.52
ATR_00068G00910	Amborella trichopoda	6e-41	155	331	30.82
OS05G45860	Oryza sativa	1e-39	150	273	33.33
PP00334G00230	Physcomitrella patens	2e-39	145	274	33.21
OS05G37130	Oryza sativa	2e-39	146	216	36.11
ATR_03830G00010	Amborella trichopoda	3e-38	144	280	32.86
OS03G40330	Oryza sativa	5e-37	138	265	36.98
AT3G55780	Arabidopsis thaliana	1e-36	142	327	29.97
ATR_00012G01430	Amborella trichopoda	3e-36	137	244	35.66
ATR_00013G01360	Amborella trichopoda	1e-31	121	129	47.29
ATR_00044G01260	Amborella trichopoda	8e-29	116	231	32.47
ES0128G00270	Ectocarpus siliculosus	2e-22	99.8	263	28.52
OS03G56130	Oryza sativa	3e-19	91.3	176	37.50
OS03G22530	Oryza sativa	1e-18	85.1	110	40.00
ATR_00044G01250	Amborella trichopoda	1e-16	81.3	104	41.35
ATR_00104G00310	Amborella trichopoda	2e-16	80.1	151	32.45
Naga_100464g2	Nannochloropsis gaditana	5e-15	79.3	328	25.00
OS07G41014	Oryza sativa	2e-13	75.1	155	35.48
emh707260	Emiliania huxleyi	6e-12	70.1	295	25.76
emh134840	Emiliania huxleyi	6e-12	70.1	295	25.76
ATR_00095G01020	Amborella trichopoda	1e-11	65.5	74	43.24
AA0001G04770	Aureococcus anophagefferens	2e-11	64.3	91	38.46
ATR_00095G01000	Amborella trichopoda	2e-09	63.2	59	47.46
OS03G25790	Oryza sativa	5e-09	61.2	158	29.75
ATR_00164G00170	Amborella trichopoda	2e-08	59.7	192	26.56
emh314000	Emiliania huxleyi	3e-06	50.1	109	32.11

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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