Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G34810	Arabidopsis thaliana	0.0	1122	541	100.00
AT1G30720	Arabidopsis thaliana	2e-179	523	515	50.68
AT1G30710	Arabidopsis thaliana	1e-174	511	538	52.42
AT1G30730	Arabidopsis thaliana	4e-174	509	528	47.54
AT1G34575	Arabidopsis thaliana	1e-173	508	535	51.78
AT1G11770	Arabidopsis thaliana	5e-159	471	540	46.48
AT1G30700	Arabidopsis thaliana	3e-156	464	510	49.02
AT1G26420	Arabidopsis thaliana	1e-153	457	530	44.72
AT1G01980	Arabidopsis thaliana	3e-151	452	526	46.77
AT1G26410	Arabidopsis thaliana	5e-151	451	503	46.92
AT4G20840	Arabidopsis thaliana	6e-151	451	511	45.79
AT1G26390	Arabidopsis thaliana	2e-149	446	503	47.32
AT4G20800	Arabidopsis thaliana	6e-149	445	518	44.98
AT1G26400	Arabidopsis thaliana	1e-147	442	529	44.80
AT1G26380	Arabidopsis thaliana	3e-146	439	506	44.86
AT1G30760	Arabidopsis thaliana	3e-142	428	523	45.32
AT4G20830	Arabidopsis thaliana	9e-140	423	514	45.91
AT5G44400	Arabidopsis thaliana	3e-139	421	542	42.62
AT2G34790	Arabidopsis thaliana	4e-136	412	539	41.93
AT1G30740	Arabidopsis thaliana	1e-134	409	521	43.57
AT4G20860	Arabidopsis thaliana	3e-130	397	470	45.11
AT5G44360	Arabidopsis thaliana	2e-129	395	536	41.60
AT5G44390	Arabidopsis thaliana	3e-128	392	519	40.46
AT5G44380	Arabidopsis thaliana	3e-127	390	544	40.62
AT4G20820	Arabidopsis thaliana	7e-127	389	503	41.15
AT5G44440	Arabidopsis thaliana	4e-121	374	534	39.89
OS06G35590	Oryza sativa	1e-116	362	518	40.35
AT5G44410	Arabidopsis thaliana	3e-116	361	544	41.36
OS06G35700	Oryza sativa	5e-113	353	545	39.45
OS06G35650	Oryza sativa	5e-108	340	511	38.16
ATR_00032G02430	Amborella trichopoda	6e-106	335	465	39.78
ATR_00018G00570	Amborella trichopoda	1e-105	333	516	37.98
ATR_00032G02440	Amborella trichopoda	8e-101	323	481	38.46
ATR_00038G01030	Amborella trichopoda	1e-100	320	519	38.73
OS02G14090	Oryza sativa	8e-100	320	523	37.28
OS06G35630	Oryza sativa	3e-99	317	540	36.48
OS06G35560	Oryza sativa	9e-99	316	492	38.21
OS08G06170	Oryza sativa	2e-96	310	512	38.09
OS06G35660	Oryza sativa	1e-95	307	544	38.24
ATR_00038G01000	Amborella trichopoda	1e-95	308	475	40.00
OS11G30310	Oryza sativa	3e-95	307	538	36.06
OS08G06190	Oryza sativa	1e-88	290	498	37.55
OS08G25490	Oryza sativa	9e-83	273	498	36.55
OS08G06180	Oryza sativa	7e-62	213	352	38.35
ATR_00038G01020	Amborella trichopoda	4e-44	163	277	37.91
PI00G58120	Picochlorum sp. SENEW3 (SE3)	6e-36	147	464	29.53
RCC4223.12g02580	Picochlorum_RCC4223	8e-36	146	433	31.41
PP00128G00550	Physcomitrella patens	8e-32	132	502	24.90
ATR_00038G01010	Amborella trichopoda	7e-27	111	148	45.27
phs48790	Phytophtora sojae	9e-27	117	533	25.33
RCC4223.05g04340	Picochlorum_RCC4223	1e-26	117	470	27.02
phs48910	Phytophtora sojae	2e-26	115	500	26.20
CNC64A_017G02020	Chlorella sp NC64A	7e-26	116	431	27.84
OS10G21690	Oryza sativa	5e-23	102	97	44.33
DDB_G0285535	Dictyostelium discoideum	3e-20	97.8	472	23.52
CNC64A_012G03740	Chlorella sp NC64A	9e-18	90.5	472	27.33
DDB_G0275585	Dictyostelium discoideum	9e-17	87.0	188	28.19
emh513910	Emiliania huxleyi	9e-16	84.7	467	21.63
VC00G71470	Volvox carteri	1e-15	83.6	188	27.66
ATR_00743G00010	Amborella trichopoda	5e-15	75.5	72	48.61
phs198240	Phytophtora sojae	6e-15	81.3	491	23.01
emh608850	Emiliania huxleyi	6e-15	81.6	501	22.55
DDB_G0269892	Dictyostelium discoideum	8e-15	80.9	469	23.88
ES0592G00010	Ectocarpus siliculosus	3e-14	79.7	157	31.85
emh483550	Emiliania huxleyi	1e-13	75.9	206	26.21
phs198140	Phytophtora sojae	1e-13	77.0	480	22.92
phs198120	Phytophtora sojae	1e-13	77.0	480	22.92
phs14570	Phytophtora sojae	2e-13	77.0	478	23.22
phs377830	Phytophtora sojae	3e-13	76.3	493	22.52
PI00G39960	Picochlorum sp. SENEW3 (SE3)	4e-13	75.9	506	24.90
OS07G46740	Oryza sativa	2e-12	70.5	149	27.52
OS08G41350	Oryza sativa	1e-11	68.6	169	30.18
OS05G48480	Oryza sativa	1e-11	68.9	148	29.73
OS05G48440	Oryza sativa	1e-11	68.9	148	29.73
DDB_G0269576	Dictyostelium discoideum	1e-11	70.9	161	30.43
emh493500	Emiliania huxleyi	3e-11	69.7	171	28.07
ccr141400	Chondrus crispus	5e-11	69.7	176	30.11
CR11G03780	Chlamydomonas reinhardtii	1e-10	68.2	186	27.96
emh599240	Emiliania huxleyi	2e-10	67.8	321	26.48
VC00G71480	Volvox carteri	4e-10	66.2	182	24.18
CNC64A_016G01460	Chlorella sp NC64A	5e-10	65.9	182	26.92
phs198220	Phytophtora sojae	1e-09	62.8	184	23.91
phs13360	Phytophtora sojae	1e-09	63.5	139	33.09
DDB_G0283303	Dictyostelium discoideum	1e-09	64.3	213	28.64
FC001G09800	Fragilariopsis cylindrus	1e-08	61.6	170	22.94
OS01G42990	Oryza sativa	1e-08	61.6	105	30.48
ATR_00004G01430	Amborella trichopoda	2e-08	60.8	260	24.62
emh439910	Emiliania huxleyi	2e-08	61.2	231	25.54
FC030G01460	Fragilariopsis cylindrus	5e-08	59.7	173	28.90
phs257230	Phytophtora sojae	5e-08	59.3	368	20.65
emh521970	Emiliania huxleyi	1e-07	58.2	189	26.98
FC008G08130	Fragilariopsis cylindrus	1e-07	58.5	186	25.81
emh416000	Emiliania huxleyi	2e-07	58.5	235	26.81
emh597980	Emiliania huxleyi	2e-07	58.2	235	26.81
CV00G70520	Coccomyxa subellipsoidea C-169	5e-07	56.2	425	22.35
DDB_G0267624	Dictyostelium discoideum	9e-07	55.5	195	28.72
OS05G21140	Oryza sativa	9e-07	52.8	68	39.71
DDB_G0281399	Dictyostelium discoideum	1e-06	55.5	195	28.72
OS01G18230	Oryza sativa	2e-06	52.8	65	38.46
FC003G04330	Fragilariopsis cylindrus	6e-06	53.1	380	22.11

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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