Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G30710	Arabidopsis thaliana	0.0	1102	532	100.00
AT1G34575	Arabidopsis thaliana	0.0	924	532	86.09
AT1G30720	Arabidopsis thaliana	0.0	530	517	54.16
AT1G30730	Arabidopsis thaliana	1e-176	516	528	50.76
AT1G30700	Arabidopsis thaliana	1e-174	511	532	52.44
AT2G34810	Arabidopsis thaliana	6e-169	496	523	52.96
AT4G20840	Arabidopsis thaliana	6e-161	476	506	48.62
AT5G44390	Arabidopsis thaliana	9e-159	471	522	45.98
AT1G11770	Arabidopsis thaliana	4e-157	466	534	46.82
AT1G26380	Arabidopsis thaliana	6e-157	466	510	48.43
AT1G01980	Arabidopsis thaliana	7e-157	466	522	48.47
AT5G44400	Arabidopsis thaliana	2e-156	464	530	43.96
AT1G26390	Arabidopsis thaliana	2e-155	462	496	49.60
AT1G26420	Arabidopsis thaliana	6e-155	460	529	46.31
AT1G26410	Arabidopsis thaliana	7e-155	461	505	47.52
AT1G26400	Arabidopsis thaliana	2e-153	456	528	45.83
AT2G34790	Arabidopsis thaliana	2e-153	456	529	44.23
AT4G20800	Arabidopsis thaliana	1e-151	452	515	47.57
AT1G30760	Arabidopsis thaliana	1e-151	452	511	45.60
AT4G20820	Arabidopsis thaliana	4e-150	448	528	44.32
AT4G20830	Arabidopsis thaliana	3e-148	444	512	46.88
AT5G44380	Arabidopsis thaliana	7e-144	432	537	44.13
AT5G44440	Arabidopsis thaliana	7e-142	427	529	44.23
AT5G44360	Arabidopsis thaliana	3e-140	423	534	44.38
AT4G20860	Arabidopsis thaliana	6e-139	419	464	47.84
AT5G44410	Arabidopsis thaliana	1e-137	416	536	44.59
OS06G35590	Oryza sativa	8e-136	411	522	42.53
AT1G30740	Arabidopsis thaliana	1e-135	411	533	43.90
OS06G35700	Oryza sativa	1e-134	408	508	43.70
OS06G35560	Oryza sativa	3e-127	389	493	42.60
OS06G35650	Oryza sativa	3e-127	389	508	42.72
OS06G35630	Oryza sativa	8e-123	378	532	40.60
OS02G14090	Oryza sativa	3e-121	375	521	39.16
ATR_00032G02430	Amborella trichopoda	6e-120	370	459	44.23
OS06G35660	Oryza sativa	1e-119	370	546	41.58
OS11G30310	Oryza sativa	1e-119	370	527	40.61
ATR_00032G02440	Amborella trichopoda	3e-119	370	480	43.96
ATR_00038G01030	Amborella trichopoda	6e-119	368	534	39.51
ATR_00018G00570	Amborella trichopoda	1e-116	362	487	39.63
ATR_00038G01000	Amborella trichopoda	1e-111	350	534	38.58
OS08G06190	Oryza sativa	2e-108	341	514	38.91
OS08G06170	Oryza sativa	6e-107	337	486	40.12
OS08G25490	Oryza sativa	3e-94	303	482	38.80
OS08G06180	Oryza sativa	2e-68	230	345	36.52
PP00128G00550	Physcomitrella patens	5e-42	162	462	28.35
ATR_00038G01020	Amborella trichopoda	1e-39	150	281	35.59
RCC4223.12g02580	Picochlorum_RCC4223	4e-39	156	456	29.61
RCC4223.05g04340	Picochlorum_RCC4223	4e-37	147	460	30.22
PI00G58120	Picochlorum sp. SENEW3 (SE3)	8e-36	146	459	28.10
ATR_00038G01010	Amborella trichopoda	7e-32	125	175	44.00
phs48790	Phytophtora sojae	4e-30	127	515	28.16
OS10G21690	Oryza sativa	1e-27	114	99	49.49
phs48910	Phytophtora sojae	5e-26	114	445	29.89
DDB_G0285535	Dictyostelium discoideum	2e-25	113	465	25.16
CNC64A_017G02020	Chlorella sp NC64A	1e-23	109	435	26.90
CNC64A_012G03740	Chlorella sp NC64A	3e-22	103	457	26.04
DDB_G0269892	Dictyostelium discoideum	2e-20	98.2	504	26.79
OS05G48480	Oryza sativa	5e-18	88.2	293	27.65
OS05G48440	Oryza sativa	5e-18	88.2	293	27.65
DDB_G0267624	Dictyostelium discoideum	2e-16	85.9	509	24.56
DDB_G0283303	Dictyostelium discoideum	5e-16	84.7	481	26.20
DDB_G0281399	Dictyostelium discoideum	5e-16	84.7	494	24.90
emh513910	Emiliania huxleyi	7e-16	85.1	443	22.35
ATR_00743G00010	Amborella trichopoda	3e-15	76.3	70	52.86
CNC64A_016G01460	Chlorella sp NC64A	4e-15	82.0	222	28.38
OS08G41350	Oryza sativa	5e-15	78.6	171	33.33
phs377830	Phytophtora sojae	1e-14	80.5	481	22.87
OS07G46740	Oryza sativa	3e-14	75.5	149	33.56
phs198240	Phytophtora sojae	3e-14	79.0	254	27.17
phs198140	Phytophtora sojae	4e-14	79.0	485	23.30
phs198120	Phytophtora sojae	4e-14	79.0	485	23.30
AC00G05820	Asterochloris sp. Cgr-DA1pho v2.0	5e-14	77.8	349	25.21
phs14570	Phytophtora sojae	7e-14	77.8	480	23.54
emh493500	Emiliania huxleyi	3e-13	75.9	192	30.21
emh483550	Emiliania huxleyi	5e-13	74.3	189	28.04
emh608850	Emiliania huxleyi	9e-13	74.7	475	21.89
AA0034G00640	Aureococcus anophagefferens	9e-13	74.7	186	33.33
DDB_G0269576	Dictyostelium discoideum	2e-12	73.9	225	25.78
DDB_G0275585	Dictyostelium discoideum	2e-12	73.2	173	31.21
emh521970	Emiliania huxleyi	6e-12	72.0	221	28.05
VC00G71470	Volvox carteri	7e-12	71.6	186	27.42
VC00G71480	Volvox carteri	2e-11	70.1	450	21.11
ccr141400	Chondrus crispus	3e-11	70.5	171	33.92
phs198220	Phytophtora sojae	6e-11	66.6	193	26.42
emh416000	Emiliania huxleyi	2e-10	68.2	173	33.53
emh597980	Emiliania huxleyi	2e-10	68.2	173	33.53
ES0592G00010	Ectocarpus siliculosus	2e-10	67.8	490	23.27
FC001G09800	Fragilariopsis cylindrus	4e-10	66.2	192	28.65
phs13360	Phytophtora sojae	1e-09	63.5	152	32.89
emh484110	Emiliania huxleyi	1e-09	64.7	207	28.02
emh599240	Emiliania huxleyi	7e-09	62.8	197	32.99
DDB_G0289697	Dictyostelium discoideum	9e-09	61.6	463	21.60
phs257230	Phytophtora sojae	1e-08	61.6	260	22.69
FC030G01460	Fragilariopsis cylindrus	1e-08	61.2	187	32.62
FC008G08130	Fragilariopsis cylindrus	2e-08	61.2	304	25.99
OS01G42990	Oryza sativa	5e-08	59.7	133	28.57
PI00G39960	Picochlorum sp. SENEW3 (SE3)	1e-07	58.5	152	30.26
emh07040	Emiliania huxleyi	1e-07	55.8	164	27.44
CR11G03780	Chlamydomonas reinhardtii	2e-07	57.8	185	26.49
OS05G28490	Oryza sativa	3e-07	55.8	81	33.33
ATR_00030G01000	Amborella trichopoda	7e-07	55.8	198	27.27
emh439910	Emiliania huxleyi	2e-06	55.5	182	29.67
FC003G04330	Fragilariopsis cylindrus	2e-06	54.7	121	29.75
emh608470	Emiliania huxleyi	7e-06	52.8	166	28.31

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment