Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G03220	Arabidopsis thaliana	0.0	874	434	100.00
AT1G03230	Arabidopsis thaliana	0.0	757	429	90.21
ATR_00025G00580	Amborella trichopoda	8e-147	432	429	54.08
OS05G33400	Oryza sativa	2e-132	395	406	50.74
ATR_00025G00590	Amborella trichopoda	3e-130	389	422	52.37
OS05G33430	Oryza sativa	1e-127	384	445	46.52
OS05G33410	Oryza sativa	4e-127	382	409	48.90
ATR_00058G01660	Amborella trichopoda	7e-111	340	418	44.26
ATR_00058G01670	Amborella trichopoda	2e-87	280	429	41.96
OS09G25910	Oryza sativa	8e-80	260	425	39.76
ATR_00025G00610	Amborella trichopoda	4e-78	255	438	38.58
OS01G71094	Oryza sativa	2e-64	219	433	35.33
OS05G33420	Oryza sativa	5e-57	197	196	53.06
OS01G71080	Oryza sativa	1e-55	196	433	32.79
OS01G71070	Oryza sativa	3e-54	192	426	33.57
OS01G71060	Oryza sativa	1e-50	181	394	32.99
AT5G19110	Arabidopsis thaliana	3e-50	181	401	31.67
OS01G71090	Oryza sativa	2e-48	176	423	30.02
AT5G19120	Arabidopsis thaliana	1e-47	174	411	33.82
AT5G19100	Arabidopsis thaliana	9e-47	171	443	34.31
AT5G48430	Arabidopsis thaliana	2e-40	154	444	30.18
OS01G71160	Oryza sativa	5e-37	145	420	30.24
OS01G71140	Oryza sativa	6e-37	145	457	29.32
OS01G71130	Oryza sativa	5e-32	130	471	29.09
PP00157G00370	Physcomitrella patens	7e-17	86.7	392	26.02
ATR_00030G01720	Amborella trichopoda	8e-16	83.2	391	24.30
PP00006G00090	Physcomitrella patens	1e-15	82.4	375	22.93
OS07G34920	Oryza sativa	4e-14	78.2	395	26.33
AT1G09750	Arabidopsis thaliana	8e-14	77.0	371	26.42
ATR_00063G00660	Amborella trichopoda	1e-13	76.3	386	25.13
OS06G40818	Oryza sativa	6e-13	74.7	381	24.93
AT3G54400	Arabidopsis thaliana	1e-12	73.2	392	24.74
AT5G36260	Arabidopsis thaliana	2e-12	72.8	426	23.24
OS03G08790	Oryza sativa	2e-11	69.3	396	24.49
OS09G27910	Oryza sativa	9e-11	67.4	383	25.33
PP00024G00280	Physcomitrella patens	1e-10	67.4	249	28.11
OS08G36530	Oryza sativa	1e-10	67.4	394	23.86
OS03G20260	Oryza sativa	2e-10	66.2	391	23.02
AT2G39710	Arabidopsis thaliana	3e-10	65.5	386	23.83
OS04G37550	Oryza sativa	5e-10	65.1	391	24.55
ATR_00061G00270	Amborella trichopoda	6e-10	65.1	390	22.05
AT3G12700	Arabidopsis thaliana	9e-10	64.3	403	25.56
OS03G20290	Oryza sativa	1e-09	63.9	381	23.10
OS03G16500	Oryza sativa	2e-09	63.5	400	23.25
AT2G35615	Arabidopsis thaliana	2e-09	62.8	400	27.00
AT3G25700	Arabidopsis thaliana	3e-09	62.8	385	25.45
AT3G59080	Arabidopsis thaliana	4e-09	62.8	385	21.82
PP00174G00020	Physcomitrella patens	4e-09	62.4	403	24.81
AT3G52500	Arabidopsis thaliana	4e-09	62.4	396	23.23
ATR_00095G01310	Amborella trichopoda	6e-09	62.0	412	24.27
AT5G07030	Arabidopsis thaliana	7e-09	61.6	389	23.39
OS01G72510	Oryza sativa	7e-09	61.6	377	24.93
ATR_00095G01300	Amborella trichopoda	7e-09	61.6	341	25.51
ATR_00061G00280	Amborella trichopoda	8e-09	61.2	386	21.76
AT1G01300	Arabidopsis thaliana	1e-08	60.8	399	24.81
PI00G62980	Picochlorum sp. SENEW3 (SE3)	1e-08	61.2	248	25.40
ATR_00010G00450	Amborella trichopoda	2e-08	60.5	405	22.47
ATR_00135G00060	Amborella trichopoda	2e-08	60.1	415	24.34
AT3G02740	Arabidopsis thaliana	4e-08	59.3	409	23.47
PP00315G00020	Physcomitrella patens	4e-08	59.3	290	24.83
OS03G20210	Oryza sativa	5e-08	58.9	400	23.50
OS01G41550	Oryza sativa	6e-08	58.5	403	23.33
PP00395G00190	Physcomitrella patens	7e-08	58.5	382	24.08
OS02G48900	Oryza sativa	1e-07	57.8	396	22.73
OS01G04710	Oryza sativa	1e-07	57.8	388	22.68
ATR_00032G00810	Amborella trichopoda	1e-07	57.8	311	24.44
RCC4223.06g02620	Picochlorum_RCC4223	2e-07	57.4	248	24.60
AT2G42980	Arabidopsis thaliana	2e-07	57.0	385	23.38
OS07G34870	Oryza sativa	3e-07	56.2	405	23.70
OS03G20270	Oryza sativa	4e-07	55.5	352	25.00
AT5G02190	Arabidopsis thaliana	4e-07	55.8	385	21.82
PP00006G00100	Physcomitrella patens	4e-07	55.8	397	22.92
PP00038G01900	Physcomitrella patens	5e-07	56.2	345	24.64
OS01G62630	Oryza sativa	6e-07	55.5	393	23.66
ATR_00012G02390	Amborella trichopoda	6e-07	55.5	377	21.49
OS07G40260	Oryza sativa	8e-07	55.5	403	20.35
AT1G05840	Arabidopsis thaliana	9e-07	55.1	388	21.65
ATR_00068G01530	Amborella trichopoda	1e-06	54.7	405	23.46
AT1G64830	Arabidopsis thaliana	1e-06	54.7	411	23.60
OS02G21040	Oryza sativa	2e-06	54.3	387	23.00
ATR_00007G02510	Amborella trichopoda	2e-06	53.5	398	23.87
OS12G39360	Oryza sativa	3e-06	53.5	390	23.33
OS02G48860	Oryza sativa	3e-06	53.1	391	23.02
ATR_00143G00260	Amborella trichopoda	4e-06	52.8	394	20.30
ATR_00008G01980	Amborella trichopoda	4e-06	52.8	388	23.45
PP00083G00690	Physcomitrella patens	5e-06	52.8	355	22.82
AT2G03200	Arabidopsis thaliana	5e-06	52.4	394	21.83
ATR_00095G01170	Amborella trichopoda	6e-06	52.4	221	25.34

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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