Functional clusters

Information

  • Type MapMan
  • Description Enzyme classification.EC_2 transferases

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG16 1 CH_aco_14 14 64 0.0000000259005
Ananas comosus LG10 1 CH_aco_34 8 17 0.00000183005
Allium sativum chr4 1 CH_asa_314 6 6 0.00000846875
Allium sativum chr7_2 1 CH_asa_451 14 73 0.0000741104
Cenchrus purpureus GWHAORA00000008 1 CH_cpu_162 16 33 0.000000000261284
Cenchrus purpureus GWHAORA00000002 1 CH_cpu_233 12 19 0.0000000101897
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_563 14 48 0.0000492808
Digitaria exilis Dexi_CM05836_chr02A 1 CH_dex_468 15 68 0.000157784
Digitaria exilis Dexi_CM05836_chr04B 1 CH_dex_605 15 73 0.000446069
Eragrostis curvula Contig44 1 CH_ecu_152 16 41 0.000000000336713
Glycine max Gm18 1 CH_gma_35 22 80 4.15759e-16
Lolium perenne Lp_chr1_0 1 CH_lpe_34 13 30 0.00000000000190261
Musa acuminata chr05 1 CH_mac_65 11 45 0.000000694875
Magnolia biondii Chr18 1 CH_mbi_210 15 78 0.000000984022
Miscanthus sinensis Chr19 1 CH_msi_319 12 47 0.000037023
Oryza alta GWHAZTO00000020 1 CH_oal_712 9 40 0.000560229
Oryza brachyantha 8 1 CH_obr_96 9 18 0.000000437232
Oryza sativa ssp. indica Chr4 1 CH_osaindica_176 12 45 0.0000057313
Oryza sativa ssp. indica Chr10 1 CH_osaindica_415 8 24 0.000985007
Phyllostachys edulis hic_scaffold_7 1 CH_ped_355 15 80 0.0001613
Phyllostachys edulis hic_scaffold_6 1 CH_ped_417 11 41 0.000374351
Phyllostachys edulis hic_scaffold_13 1 CH_ped_418 11 41 0.000374351
Phyllostachys edulis hic_scaffold_1 1 CH_ped_496 12 54 0.00080053
Panicum hallii Chr04 1 CH_pha_195 9 22 0.00000540391
Sorghum bicolor Chr02 1 CH_sbi_251 12 55 0.000037326
Secale cereale GWHASIY00000001 1 CH_sce_81 17 38 0.00000000000483743
Sequoiadendron giganteum chr7 1 CH_sgi_296 21 63 0.0000000000429934
Sequoiadendron giganteum chr5 1 CH_sgi_660 14 45 0.00000738813
Setaria italica scaffold_3 1 CH_sit_130 11 22 0.0000000356977
Saccharum spontaneum Chr2A 1 CH_ssp_1101 11 35 0.000483815
Saccharum spontaneum Chr2B 1 CH_ssp_560 17 78 0.0000216611
Triticum aestivum Chr1B 1 CH_tae_145 20 42 0.0000000000000250309
Triticum aestivum Chr2B 1 CH_tae_273 13 19 0.0000000000720029
Triticum aestivum Chr1D 1 CH_tae_384 16 40 0.00000000300367
Triticum dicoccoides 5B 1 CH_tdi_199 8 9 0.000000302507
Triticum dicoccoides 7A 1 CH_tdi_598 7 12 0.000827545
Triticum turgidum chr7A 1 CH_ttu_270 19 80 0.000000637036
Triticum turgidum chr1A 1 CH_ttu_41 19 34 0.00000000000000430262
Triticum turgidum chr6B 1 CH_ttu_490 6 6 0.0000789097
Triticum turgidum chr2A 1 CH_ttu_729 9 22 0.000929981
Triticum turgidum chr2B 1 CH_ttu_88 12 14 0.00000000000819186
Ananas comosus LG16 2 CH_aco_14 14 64 0.0000000259005
Ananas comosus LG10 2 CH_aco_34 8 17 0.00000183005
Allium sativum chr4 2 CH_asa_314 6 6 0.00000846875
Allium sativum chr7_2 2 CH_asa_451 14 73 0.0000741104
Cenchrus purpureus GWHAORA00000008 2 CH_cpu_162 16 33 0.000000000261284
Cenchrus purpureus GWHAORA00000002 2 CH_cpu_233 12 19 0.0000000101897
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_563 14 48 0.0000492808
Digitaria exilis Dexi_CM05836_chr02A 2 CH_dex_468 15 68 0.000157784
Digitaria exilis Dexi_CM05836_chr04B 2 CH_dex_605 15 73 0.000446069
Eragrostis curvula Contig44 2 CH_ecu_152 16 41 0.000000000336713
Glycine max Gm18 2 CH_gma_35 22 80 4.15759e-16
Lolium perenne Lp_chr1_0 2 CH_lpe_34 13 30 0.00000000000190261
Musa acuminata chr05 2 CH_mac_65 11 45 0.000000694875
Magnolia biondii Chr18 2 CH_mbi_210 15 78 0.000000984022
Miscanthus sinensis Chr19 2 CH_msi_319 12 47 0.000037023
Oryza alta GWHAZTO00000020 2 CH_oal_712 9 40 0.000560229
Oryza brachyantha 8 2 CH_obr_96 9 18 0.000000437232
Oryza sativa ssp. indica Chr4 2 CH_osaindica_176 12 45 0.0000057313
Oryza sativa ssp. indica Chr10 2 CH_osaindica_415 8 24 0.000985007
Phyllostachys edulis hic_scaffold_7 2 CH_ped_355 15 80 0.0001613
Phyllostachys edulis hic_scaffold_6 2 CH_ped_417 11 41 0.000374351
Phyllostachys edulis hic_scaffold_13 2 CH_ped_418 11 41 0.000374351
Phyllostachys edulis hic_scaffold_1 2 CH_ped_496 12 54 0.00080053
Panicum hallii Chr04 2 CH_pha_195 9 22 0.00000540391
Sorghum bicolor Chr02 2 CH_sbi_251 12 55 0.000037326
Secale cereale GWHASIY00000001 2 CH_sce_81 17 38 0.00000000000483743
Sequoiadendron giganteum chr7 2 CH_sgi_296 21 63 0.0000000000429934
Sequoiadendron giganteum chr5 2 CH_sgi_660 14 45 0.00000738813
Setaria italica scaffold_3 2 CH_sit_130 11 22 0.0000000356977
Saccharum spontaneum Chr2A 2 CH_ssp_1101 11 35 0.000483815
Saccharum spontaneum Chr2B 2 CH_ssp_560 17 78 0.0000216611
Triticum aestivum Chr1B 2 CH_tae_145 20 42 0.0000000000000250309
Triticum aestivum Chr2B 2 CH_tae_273 13 19 0.0000000000720029
Triticum aestivum Chr1D 2 CH_tae_384 16 40 0.00000000300367
Triticum dicoccoides 5B 2 CH_tdi_199 8 9 0.000000302507
Triticum dicoccoides 7A 2 CH_tdi_598 7 12 0.000827545
Triticum turgidum chr7A 2 CH_ttu_270 19 80 0.000000637036
Triticum turgidum chr1A 2 CH_ttu_41 19 34 0.00000000000000430262
Triticum turgidum chr6B 2 CH_ttu_490 6 6 0.0000789097
Triticum turgidum chr2A 2 CH_ttu_729 9 22 0.000929981
Triticum turgidum chr2B 2 CH_ttu_88 12 14 0.00000000000819186

Available child term results

Ontology identifier Description Number of clusters
50.2.1 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group 346
50.2.2 Enzyme classification.EC_2 transferases.EC_2.2 transferase transferring aldehyde or ketonic group 4
50.2.3 Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase 308
50.2.4 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase 886
50.2.5 Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group 60
50.2.6 Enzyme classification.EC_2 transferases.EC_2.6 transferase transferring nitrogenous group 4
50.2.7 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group 546
50.2.8 Enzyme classification.EC_2 transferases.EC_2.8 transferase transferring sulfur-containing group 178

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001