Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Glycine max Gm05 1 CH_gma_316 5 8 0.0000354386
Glycine max Gm05 2 CH_gma_316 5 8 0.0000354386

Available child term results

Ontology identifier Description Number of clusters
10.1.1 Redox homeostasis.controlled reactive oxygen generation.NADPH-oxidase (Rboh) 14
10.2.1.1 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.iron superoxide dismutase (FSD) 2
10.2.1.2 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.manganese superoxide dismutase (MSD) 4
10.2.1.3 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.copper/zinc superoxide dismutase (CSD) 2
10.2.2 Redox homeostasis.enzymatic reactive oxygen scavenging.catalase 6
10.2.3 Redox homeostasis.enzymatic reactive oxygen scavenging.glutathione peroxidase 12
10.3.1.2 Redox homeostasis.glutathione-based redox regulation.glutathione biosynthesis.glutathione synthetase (GS) 8
10.3.2.1 Redox homeostasis.glutathione-based redox regulation.glutathione degradation.gamma-glutamyl cyclotransferase 12
10.3.2.2 Redox homeostasis.glutathione-based redox regulation.glutathione degradation.oxoprolinase 8
10.3.3.1 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class zeta glutathione S-transferase 2
10.3.3.2 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class theta glutathione S-transferase 16
10.3.3.3 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class tau glutathione S-transferase 350
10.3.3.4 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class phi glutathione S-transferase 184
10.3.3.6 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class TCHQD glutathione S-transferase 6
10.4.1 Redox homeostasis.thiol-based redox regulation.thioredoxin reductase activities 2
10.4.1.1 Redox homeostasis.thiol-based redox regulation.thioredoxin reductase activities.NADPH-dependent thioredoxin reductase 10
10.4.2.1 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 6
10.4.2.2 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) 4
10.4.2.3 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.1-Cys peroxiredoxin (1-CysPrx) 20
10.4.2.4 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.type-2 peroxiredoxin (PrxII) 10
10.4.3.2 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.H-type thioredoxin 24
10.4.3.5 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.atypical thioredoxin (ACHT) 2
10.4.3.8 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.nucleoredoxin 38
10.4.3.9 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.plastidial thioredoxin (WCRKC) 2
10.4.4.1 Redox homeostasis.thiol-based redox regulation.methionine sulfoxide reductase activities.methionine S-enantiomer sulfoxide reductase (MsrA) 18
10.4.4.2 Redox homeostasis.thiol-based redox regulation.methionine sulfoxide reductase activities.methionine R-enantiomer sulfoxide reductase (MsrB) 8
10.5.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate peroxidase (APX) 4
10.5.2 Redox homeostasis.ascorbate-based redox regulation.monodehydroascorbate reductase (MDAR) 34
10.5.3 Redox homeostasis.ascorbate-based redox regulation.dehydroascorbate reductase (DHAR) 10
10.5.4 Redox homeostasis.ascorbate-based redox regulation.glutathione reductase (GR) 2
10.5.5 Redox homeostasis.ascorbate-based redox regulation.cyt-b561 electron shuttle hemoprotein (CYBASC) 10
10.5.6.1.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.phosphomannose isomerase (PMI) 4
10.5.6.1.2 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.phosphomannomutase (PMM) 4
10.5.6.1.3 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-D-mannose pyrophosphorylase (VTC1) 6
10.5.6.1.4 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-D-mannose-epimerase (GME) 2
10.5.6.1.5 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-L-galactose phosphorylase (VTC2/5) 2
10.5.6.1.6 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactose-1-phosphate phosphatase (VTC4) 2
10.5.6.1.7 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactose dehydrogenase (GalDH) 4
10.5.6.1.8 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactono-1,4-lactone dehydrogenase (GLDH) 8
10.5.6.2.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-gulose and D-gluconorate biosynthesis pathways.L-gulono-1,4-lactone oxidase (GULLO) 60
10.5.6.3 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.ascorbate transporter 2
10.6.2 Redox homeostasis.tocopherol biosynthesis.4-hydroxyphenylpyruvate dioxygenase (HPPD) 14
10.6.3 Redox homeostasis.tocopherol biosynthesis.homogentisate phytyltransferase (VTE2/HPT) 6
10.6.5 Redox homeostasis.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) 4
10.6.6 Redox homeostasis.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) 10
10.6.7 Redox homeostasis.tocopherol biosynthesis.phytol kinase (VTE5) 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001