Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-gulose and D-gluconorate biosynthesis pathways.L-gulono-1,4-lactone oxidase (GULLO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 1 | CH_aag_8 | 7 | 40 | 0.00000000000000404641 |
| Allium sativum | chr6 | 1 | CH_asa_15 | 7 | 14 | 7.32456e-21 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_114 | 3 | 3 | 0.0000000430914 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 1 | CH_atr_286 | 2 | 2 | 0.000476644 |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_131 | 3 | 4 | 0.00000273763 |
| Digitaria exilis | Dexi_CM05836_chr08A | 1 | CH_dex_377 | 3 | 5 | 0.000033891 |
| Eragrostis curvula | Contig4 | 1 | CH_ecu_354 | 4 | 34 | 0.00000169732 |
| Glycine max | Gm16 | 1 | CH_gma_161 | 3 | 3 | 0.000000121016 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_429 | 2 | 2 | 0.000899989 |
| Musa acuminata | chr02 | 1 | CH_mac_12 | 5 | 5 | 0.00000000000000164174 |
| Magnolia biondii | Chr09 | 1 | CH_mbi_117 | 4 | 11 | 0.0000000079333 |
| Oryza sativa ssp. indica | Chr4 | 1 | CH_osaindica_166 | 3 | 5 | 0.00000336188 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_259 | 2 | 2 | 0.000711845 |
| Phyllostachys edulis | hic_scaffold_18 | 1 | CH_ped_500 | 2 | 2 | 0.000855659 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_362 | 2 | 2 | 0.0001734 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_757 | 3 | 7 | 0.000317776 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_133 | 7 | 7 | 5.63569e-17 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_261 | 6 | 9 | 0.00000000000484573 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_47 | 12 | 22 | 2.14387e-26 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_588 | 4 | 6 | 0.000000847586 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_639 | 4 | 8 | 0.00000394874 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_975 | 3 | 3 | 0.0000540383 |
| Selaginella moellendorffii | scaffold_52 | 1 | CH_smo_159 | 4 | 47 | 0.000776149 |
| Spirodela polyrhiza | pseudo9 | 1 | CH_spo_24 | 5 | 6 | 0.00000000000224343 |
| Triticum aestivum | Chr5A | 1 | CH_tae_407 | 4 | 4 | 0.00000000575079 |
| Triticum aestivum | Chr4B | 1 | CH_tae_408 | 4 | 4 | 0.00000000575079 |
| Triticum dicoccoides | 4B | 1 | CH_tdi_186 | 4 | 7 | 0.000000161607 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_117 | 3 | 12 | 0.0000180018 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_364 | 2 | 2 | 0.00073888 |
| Zostera marina | Chr06 | 1 | CH_zosmarina_32 | 5 | 32 | 0.00000000732062 |
| Anthoceros agrestis | Sc2ySwM_344 | 2 | CH_aag_8 | 7 | 40 | 0.00000000000000404641 |
| Allium sativum | chr6 | 2 | CH_asa_15 | 7 | 14 | 7.32456e-21 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_114 | 3 | 3 | 0.0000000430914 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 2 | CH_atr_286 | 2 | 2 | 0.000476644 |
| Brachypodium distachyon | Bd3 | 2 | CH_bdi_131 | 3 | 4 | 0.00000273763 |
| Digitaria exilis | Dexi_CM05836_chr08A | 2 | CH_dex_377 | 3 | 5 | 0.000033891 |
| Eragrostis curvula | Contig4 | 2 | CH_ecu_354 | 4 | 34 | 0.00000169732 |
| Glycine max | Gm16 | 2 | CH_gma_161 | 3 | 3 | 0.000000121016 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_429 | 2 | 2 | 0.000899989 |
| Musa acuminata | chr02 | 2 | CH_mac_12 | 5 | 5 | 0.00000000000000164174 |
| Magnolia biondii | Chr09 | 2 | CH_mbi_117 | 4 | 11 | 0.0000000079333 |
| Oryza sativa ssp. indica | Chr4 | 2 | CH_osaindica_166 | 3 | 5 | 0.00000336188 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_259 | 2 | 2 | 0.000711845 |
| Phyllostachys edulis | hic_scaffold_18 | 2 | CH_ped_500 | 2 | 2 | 0.000855659 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_362 | 2 | 2 | 0.0001734 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_757 | 3 | 7 | 0.000317776 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_133 | 7 | 7 | 5.63569e-17 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_261 | 6 | 9 | 0.00000000000484573 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_47 | 12 | 22 | 2.14387e-26 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_588 | 4 | 6 | 0.000000847586 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_639 | 4 | 8 | 0.00000394874 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_975 | 3 | 3 | 0.0000540383 |
| Selaginella moellendorffii | scaffold_52 | 2 | CH_smo_159 | 4 | 47 | 0.000776149 |
| Spirodela polyrhiza | pseudo9 | 2 | CH_spo_24 | 5 | 6 | 0.00000000000224343 |
| Triticum aestivum | Chr5A | 2 | CH_tae_407 | 4 | 4 | 0.00000000575079 |
| Triticum aestivum | Chr4B | 2 | CH_tae_408 | 4 | 4 | 0.00000000575079 |
| Triticum dicoccoides | 4B | 2 | CH_tdi_186 | 4 | 7 | 0.000000161607 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_117 | 3 | 12 | 0.0000180018 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_364 | 2 | 2 | 0.00073888 |
| Zostera marina | Chr06 | 2 | CH_zosmarina_32 | 5 | 32 | 0.00000000732062 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |