Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc09g074990.4 DNA mismatch repair protein PMS1 (AHRD V3.3 *** A0A1U8FBY8_CAPAN) SL4.0ch09 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G2100 LG-5 - View
Aethionema arabicum Aa31LG5G15860 LG-5 - View
Aethionema arabicum Aa31LG11G9470 LG-11 + View
Acer truncatum Atru.chr5.1170 chr5 - View
Actinidia chinensis Actinidia24339 Lachesis_group24 + View
Actinidia chinensis Actinidia24830 Lachesis_group15 + View
Actinidia chinensis Actinidia32227 Lachesis_group19 + View
Arabidopsis lyrata AL6G39230 scaffold_6 - View
Arabidopsis lyrata AL6G50600 scaffold_6 + View
Aquilegia oxysepala Aqoxy2G02974 CHR02 - View
Aquilegia oxysepala Aqoxy5G00738 CHR05 + View
Arabidopsis thaliana AT4G02460 DNA mismatch repair protein Encodes a protein similar to PMS1 in yeast%2C a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. POSTMEIOTIC SEGREGATION 1 (PMS1)%3B FUNCTIONS IN: mismatched DNA binding%2C ATP binding%3B INVOLVED IN: mismatch repair%2C fruit development%2C seed development%2C DNA recombination%2C pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair%2C conserved site (InterPro:IPR014762)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C DNA mismatch repair protein%2C C-terminal (InterPro:IPR013507)%2C MutL%2C C-terminal%2C dimerisation (InterPro:IPR014790)%2C DNA mismatch repair protein%2C N-terminal (InterPro:IPR014763)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C DNA mismatch repair protein (InterPro:IPR002099)%2C Post Meiotic Segregation 2 (InterPro:IPR015434)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%3B BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1)%3B Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138%3B Bacteria - 7516%3B Metazoa - 568%3B Fungi - 666%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 1435 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT5G27720 Small nuclear ribonucleoprotein family protein embryo defective 1644 (emb1644)%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%3B BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0796G058 AmTr_v1.0_scaffold00045 + View
Brassica carinata BcaC04g23643 ChrC04 + View
Brassica carinata BcaB04g19685 ChrB04 + View
Brassica napus A06p37360 A06 - View
Brassica napus A09p05420 A09 + View
Brassica napus C07p41100 C07 + View
Brassica napus C09p05900 C09 + View
Brassica oleracea BolC7t44637H C7 + View
Brassica rapa BraA06t26659Z A06 - View
Brassica rapa BraA09t36180Z A09 + View
Beta vulgaris EL10Ac7g17474 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0029265 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Vitis vinifera] Chr6 + View
Capsicum annuum CAN.G1459.13 PGAv.1.6.scaffold1459 + View
Cannabis sativa CANSAT25G0223 NC_044370.1 + View
Corylus avellana Haze_04909 Similar to PMS1: DNA mismatch repair protein PMS1 (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc01_g20720 DNA mismatch repair protein, putative chr1 + View
Coffea canephora Cc02_g34160 Probable U6 snRNA-associated Sm-like protein LSm4 chr2 + View
Citrus clementina Ciclev10018899m.g scaffold_3 + View
Ceratophyllum demersum CDE02G4041 1 + View
Carpinus fangiana Cfa005938 Cfa02 - View
Cardamine hirsuta CARHR186240 Small nuclear ribonucleoprotein family protein Chr6 + View
Cardamine hirsuta CARHR250730 MutL DNA mismatch repair protein Chr8 - View
Carya illinoinensis CiPaw.08G096800 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr08 - View
Carya illinoinensis CiPaw.07G107000 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr07 + View
Citrullus lanatus ClCG09G005970 MutL DNA mismatch repair protein CG_Chr09 - View
Capsella rubella Carub.0006s2485 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) scaffold_6 - View
Capsella rubella Carub.0006s3467 K10858 - DNA mismatch repair protein PMS2 (PMS2) scaffold_6 + View
Cucumis sativus L. CsaV3_7G029150 DNA mismatch repair protein PMS1 chr7 + View
Davidia involucrata Dinv19707 GWHABJS00000007 - View
Davidia involucrata Dinv33041 GWHABJS00000010 + View
Davidia involucrata Dinv40337 GWHABJS00000005 + View
Durio zibethinus Duzib138G0111 NW_019167893.1 - View
Durio zibethinus Duzib133G1030 NW_019167938.1 - View
Eucalyptus grandis Eucgr.K03466 Chr11 + View
Eutrema salsugineum Thhalv10028404m.g K10858 - DNA mismatch repair protein PMS2 (PMS2) scaffold_3 - View
Eutrema salsugineum Thhalv10021732m.g K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) scaffold_13 - View
Fragaria x ananassa FAN24G1953 PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM // SUBFAMILY NOT NAMED Fvb2-2 - View
Fragaria x ananassa FAN15G0019 PTHR10073//PTHR10073:SF12 - DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL // MISMATCH REPAIR ENDONUCLEASE PMS2 Fvb2-4 + View
Gossypium hirsutum Gohir.D12G135200 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) D12 - View
Glycine max Glyma.10G019100 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm10 - View
Glycine max Glyma.19G210402 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm19 + View
Glycine max Glyma.03G213600 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm03 + View
Gossypium raimondii Gorai.008G146200 Chr08 - View
Lotus japonicus Lj5g0020775 K10858 - DNA mismatch repair protein PMS2 (PMS2) chr5 + View
Magnolia biondii MBI18_g08110_MAGBIO AED:0.15 Chr18 - View
Magnolia biondii MBI19_g09229_MAGBIO AED:0.19 Chr19 - View
Malus domestica MD03G1286000 Small nuclear ribonucleoprotein family protein Chr03 + View
Manihot esculenta Manes.09G170401 Chromosome09 + View
Manihot esculenta Manes.01G217500 Chromosome01 + View
Medicago truncatula Medtr7g108700 u6 snRNA-associated-like-Smprotein chr7 + View
Nelumbo nucifera Nn3g21455 chr3 + View
Nelumbo nucifera Nn4g25821 chr4 - View
Petunia axillaris Peaxi162Scf00037g01217 Protein of unknown function (DUF1624) Peaxi162Scf00037 + View
Petunia axillaris Peaxi162Scf00001ggene001 DNA mismatch repair protein, putative Peaxi162Scf00001 - View
Punica granatum PGR044G1196 NC_045134.1 + View
Prunus persica Prupe.8G259200 Pp08 + View
Papaver somniferum PSO832G1552 NC_039367.1 - View
Populus trichocarpa Potri.002G205700 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr02 - View
Populus trichocarpa Potri.014G130700 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr14 - View
Quercus lobata QL12p027267 12 + View
Quercus lobata QL03p020177 3 - View
Rosa chinensis RcHm_v2.0_Chr6g0293721 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim01G0284100 chr01 + View
Rhododendron simsii Rhsim13G0011500 chr13 - View
Striga asiatica SGA_v2.0_scaffold2G01402 scaffold2 - View
Salix brachista Sabra14G0097300 GWHAAZH00000014 - View
Salix brachista Sabra02G0153600 GWHAAZH00000002 + View
Sechium edule Sed0008302 LG07 - View
Schrenkiella parvula Sp3g04360 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) ch3-1 + View
Schrenkiella parvula Sp6g02370 K10858 - DNA mismatch repair protein PMS2 (PMS2) ch6-1 - View
Schrenkiella parvula Sp2g20890 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) ch2-4 + View
Solanum pennellii Sopen09g029810 Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. | POSTMEIOTIC SEGREGATION 1 (PMS1) | FUNCTIONS IN: mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development | LOCATED IN: nucleus | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site , ATPase-like, ATP-binding domain , DNA mismatch repair protein, C-terminal , MutL, C-terminal, dimerisation , DNA mismatch repair protein, N-terminal , Ribosomal protein S5 domain 2-type fold , DNA mismatch repair protein , Post Meiotic Segregation 2 , Ribosomal protein S5 domain 2-type fold, subgroup | BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 Spenn-ch09 + View
Solanum pennellii Sopen01g043260 Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10) - Nicotiana tabacum (Common tobacco), embryo defective 1644 (emb1644) | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM)-related domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 Spenn-ch01 + View
Selenicereus undatus Hund05415 Scaffold_19641 + View
Trochodendron aralioides TAR362G0065 group17 - View
Trochodendron aralioides TAR365G1115 group16 + View
Theobroma cacao Thecc.01G298000 DNA mismatch repair protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104821724 sm-like protein LSM4 NW_010966542.1 + View
Tarenaya hassleriana THA.LOC104818719 sm-like protein LSM4 NW_010966177.1 + View
Trifolium pratense TPR.G9614 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI59G0539 NC_052248.1 - View
Vaccinium macrocarpon vmacro02462 Similar to PMS1: DNA mismatch repair protein PMS1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vanilla planifolia HPP92_006923 U6 snRNA-associated Sm-like protein LSm4 *** CM028152.1 - View
Vitis vinifera GSVIVG01031139001 chr14 + View