Gene: AT5G27720

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G27720
  • Transcript Identifier AT5G27720.1
  • Gene Type Coding gene
  • Location Chr5 : 9815904-9817304 : positive

Gene Family Information

  • ID HOM05D002199
  • #Genes/#Species 305/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G27720.1
  • symbol emb1644
  • Alias LSM4,SM-like protein 4
  • full_name embryo defective 1644
  • uniprot F4K4E3

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000956
IEA
Gene Ontologynuclear-transcribed mRNA catabolic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000387
IBA
Gene Ontologyspliceosomal snRNP assembly1
GO:0033962
IBA
Gene OntologyP-body assembly1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0017070
IBA
Gene OntologyU6 snRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IBA
Gene OntologyP-body1
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005688
IBA
Gene OntologyU6 snRNP1
GO:0097526
IBA
Gene Ontologyspliceosomal tri-snRNP complex1
GO:0009536
HDA
Gene Ontologyplastid3
GO:0005829
HDA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR034101 Sm-like protein Lsm4
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Mapman id Description
16.2.3.4 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm4