Gene: Solyc01g099740.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g099740.4
  • Transcript Identifier Solyc01g099740.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 82159564-82163399 : positive

Gene Family Information

  • ID HOM05D002199
  • #Genes/#Species 305/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g099740.4.1
  • uniprot A0A3Q7ENK8
  • gene_id Solyc01g099740

Descriptions

  • Description U6 snRNA-associated Sm-like protein LSm4 (AHRD V3.3 *-* A0A328E599_9ASTE)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000387
IBA
GOA Databasespliceosomal snRNP assembly
GO:0033962
IBA
GOA DatabaseP-body assembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000956
IEA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G27720
GO:0017070
IBA
GOA DatabaseU6 snRNA binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR034101 Sm-like protein Lsm4
IPR010920 LSM domain superfamily
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Mapman id Description
16.2.3.4 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm4