Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Manes.06G157800 Chromosome06 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G9300 LG-3 + View
Aethionema arabicum Aa31LG11G3400 LG-11 + View
Acer truncatum Atru.chr1.244 chr1 - View
Actinidia chinensis Actinidia31867 Lachesis_group21 + View
Actinidia chinensis Actinidia08630 Lachesis_group6 - View
Actinidia chinensis Actinidia34202 Lachesis_group3 + View
Actinidia chinensis Actinidia03159 Lachesis_group3 + View
Arabidopsis lyrata AL6G35490 scaffold_6 + View
Arabidopsis lyrata AL8G27830 scaffold_8 - View
Avicennia marina MSTRG.58 ScioBoG_102831_HRSCAF_103044 - View
Amaranthus hybridus Ah.07g205990 AmaHy_arrow1_Scaffold_7 - View
Amaranthus hybridus Ah.13g069920 AmaHy_arrow1_Scaffold_13 + View
Aquilegia oxysepala Aqoxy7G00132 CHR07 - View
Aquilegia oxysepala Aqoxy5G04190 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LG8YER arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N493LC K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT5G53180 polypyrimidine tract-binding protein 2 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. polypyrimidine tract-binding protein 2 (PTB2)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 31 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). polypyrimidine tract-binding protein 2 (PTB2)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 31 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1)%3B Has 1611 Blast hits to 972 proteins in 138 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 1107%3B Fungi - 42%3B Plants - 324%3B Viruses - 0%3B Other Eukaryotes - 128 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G24130 polypyrimidine tract-binding-like protein unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: petal%2C leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaB08g35680 ChrB08 - View
Brassica carinata BcaC04g20490 ChrC04 + View
Brassica carinata BcaB05g22021 ChrB05 - View
Brassica carinata BcaNung01212 Contig469 + View
Brassica carinata BcaB01g04230 ChrB01 - View
Brassica carinata BcaC01g06226 ChrC01 - View
Brassica napus C07p43580 C07 - View
Brassica napus C09p42970 C09 - View
Brassica napus C03p17930 C03 + View
Brassica napus A06p34970 A06 + View
Brassica napus A03p15320 A03 + View
Brassica napus A10p10690 A10 - View
Brassica oleracea BolC3t14196H C3 + View
Brassica oleracea BolC9t57166H C9 - View
Brassica oleracea BolC7t44885H C7 - View
Brassica rapa BraA03t10825Z A03 + View
Brassica rapa BraA10t43150Z A10 - View
Brassica rapa BraA06t26421Z A06 + View
Beta vulgaris EL10Ac3g05341 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr3_EL10_PGA_scaffold7 - View
Camellia sinensis var. sinensis CSS0027071 PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera] Chr7 + View
Cannabis sativa CANSAT21G1551 NC_044374.1 - View
Cicer arietinum L. Ca_16682_v3 Ca_LG5_v3 + View
Corylus avellana Haze_00118 Protein of unknown function 1 + View
Coffea canephora Cc02_g01820 Polypyrimidine tract-binding protein homolog 1 chr2 - View
Citrus clementina Ciclev10005489m.g scaffold_9 + View
Ceratophyllum demersum CDE10G1260 8 - View
Ceratophyllum demersum CDE10G0242 8 - View
Carpinus fangiana Cfa016368 Cfa06 + View
Cardamine hirsuta CARHR266250 polypyrimidine tract-binding protein 2 Chr8 - View
Cardamine hirsuta CARHR189450 unknown protein Chr6 - View
Carya illinoinensis CiPaw.05G257200 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr05 - View
Citrullus lanatus ClCG01G000550 Polypyrimidine tract binding protein, putative CG_Chr01 - View
Cucumis melo MELO3C005872.2 Polypyrimidine tract binding protein, putative chr09 + View
Carica papaya Cpa.g.sc3.57 supercontig_3 + View
Chenopodium quinoa AUR62006145 At5g53180: Polypyrimidine tract-binding protein homolog 2 C_Quinoa_Scaffold_1001 - View
Chenopodium quinoa AUR62019342 Protein of unknown function C_Quinoa_Scaffold_3107 + View
Capsella rubella Carub.0006s2186 scaffold_6 + View
Capsella rubella Carub.0008s1338 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) scaffold_8 - View
Cucumis sativus L. CsaV3_5G000650 Polypyrimidine tract binding protein, putative chr5 - View
Daucus carota DCAR_005046 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_014534 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_020306 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_010618 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv28330 GWHABJS00000004 - View
Durio zibethinus Duzib205G2067 NW_019168381.1 + View
Durio zibethinus Duzib084G0975 NW_019167827.1 - View
Durio zibethinus Duzib068G0199 NW_019167838.1 - View
Erigeron canadensis ECA233G4294 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA232G4254 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.K00333 Chr11 + View
Erythranthe guttata Migut.F01047 scaffold_6 - View
Erythranthe guttata Migut.F00238 scaffold_6 - View
Eutrema salsugineum Thhalv10016110m.g K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) scaffold_2 + View
Eutrema salsugineum Thhalv10005277m.g scaffold_6 + View
Fragaria x ananassa FAN06G4709 Fvb7-2 + View
Fragaria x ananassa FAN06G0673 Fvb7-2 + View
Fragaria x ananassa FAN10G1776 Fvb7-1 + View
Fragaria x ananassa FAN10G1818 K01945 - phosphoribosylamine--glycine ligase (purD) Fvb7-1 + View
Fragaria x ananassa FAN01G3027 PTHR24012//PTHR24012:SF386 - FAMILY NOT NAMED // PHRAGMOPLASTIN INTERACTING PROTEIN 1 Fvb7-4 - View
Fragaria x ananassa FAN03G2436 K01945 - phosphoribosylamine--glycine ligase (purD) Fvb7-3 - View
Fragaria vesca FvH4_7g31090 Fvb7 + View
Gossypium hirsutum Gohir.D08G108100 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) D08 - View
Gossypium hirsutum Gohir.D09G178500 D09 + View
Gossypium hirsutum Gohir.A12G251400 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) A12 - View
Gossypium hirsutum Gohir.D12G252200 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) D12 - View
Gossypium hirsutum Gohir.A08G097724 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) A08 + View
Gossypium hirsutum Gohir.A09G183700 A09 + View
Glycine max Glyma.04G238000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Gm04 - View
Glycine max Glyma.13G041500 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Gm13 + View
Glycine max Glyma.14G159800 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Gm14 - View
Glycine max Glyma.06G125900 Gm06 + View
Gossypium raimondii Gorai.004G115700 Chr04 + View
Gossypium raimondii Gorai.006G200500 Chr06 + View
Gossypium raimondii Gorai.008G270300 Chr08 - View
Helianthus annuus HanXRQChr13g0392541 Putative nucleotide-binding alpha-beta plait domain HanXRQChr13 + View
Helianthus annuus HanXRQChr14g0462881 Uncharacterized protein, conserved in plant genome(s), supported by expression data HanXRQChr14 + View
Helianthus annuus HanXRQChr09g0253031 Uncharacterized conserved protein HanXRQChr09 - View
Hydrangea macrophylla Hma1.2p1_0327F.1_g126750 Hma1.2p1_0327F.1 + View
Lupinus albus Lalb_Chr23g0271491 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Lalb_Chr23 + View
Lupinus albus Lalb_Chr08g0240511 KOG0114//KOG4206 - Predicted RNA-binding protein (RRM superfamily) // Spliceosomal protein snRNP-U1A/U2B Lalb_Chr08 - View
Lupinus albus Lalb_Chr11g0066601 Lalb_Chr11 + View
Lotus japonicus Lj1g0000917 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) chr1 - View
Lonicera japonica Lj1A1013G39 GWHAAZE00000001 + View
Lonicera japonica Lj3A909T47 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_8_4900 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_9_57980 Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_2_134181 Lsat_1_v8_lg_2 + View
Malus domestica MD07G1285800 Protein of unknown function Chr07 + View
Malus domestica MD01G1215900 Protein of unknown function Chr01 + View
Medicago truncatula Medtr3g090955 polypyrimidine tract-binding-like protein, putative chr3 + View
Medicago truncatula Medtr1g028440 polypyrimidine tract-binding-like protein chr1 - View
Nelumbo nucifera Nn3g19050 chr3 - View
Nicotiana tabacum Nitab4.5_0002589g0050 Unknown Nitab4.5_0002589 + View
Olea europaea Oeu041345.2 chr1 - View
Oryza sativa ssp. japonica Os01g0619000 RNA recognition motif domain domain containing protein. Similar to predicted protein. chr01 - View
Petunia axillaris Peaxi162Scf00904g00127 polypyrimidine tract-binding protein 2 Peaxi162Scf00904 + View
Punica granatum PGR142G0753 NC_045128.1 - View
Prunus persica Prupe.2G308000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Pp02 + View
Pisum sativum Psat6g038520 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr6LG2 - View
Pisum sativum Psat5g079400 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 - View
Papaver somniferum PSO384G1506 NC_039368.1 - View
Papaver somniferum PSO135G0499 NW_020631041.1 + View
Populus trichocarpa Potri.015G020800 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr15 - View
Populus trichocarpa Potri.012G031000 Chr12 + View
Phaseolus vulgaris Phvul.009G137800 Chr09 + View
Phaseolus vulgaris Phvul.009G054151 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr09 + View
Quercus lobata QL09p010723 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0380171 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim09G0204100 chr09 + View
Rhododendron simsii Rhsim03G0199900 chr03 + View
Striga asiatica SGA_v2.0_scaffold192G40573 scaffold192 - View
Striga asiatica SGA_v2.0_scaffold10G05257 scaffold10 - View
Salvia bowleyana SalBow4G2102 GWHASIU00000008 - View
Salix brachista Sabra15G0015900 GWHAAZH00000015 - View
Salix brachista Sabra12G0020500 GWHAAZH00000012 - View
Simmondsia chinensis Sc13g0009620 GWHAASQ00000013 + View
Sechium edule Sed0026580 LG05 - View
Sechium edule Sed0024329 LG01 - View
Solanum lycopersicum Solyc06g051910.3 Polypyrimidine tract-binding protein-like protein 1 (AHRD V3.3 *-* A0A2G3CWX3_CAPCH) SL4.0ch06 + View
Solanum lycopersicum Solyc03g007320.4 Polypyrimidine tract-binding protein-like protein 1 (AHRD V3.3 *** A0A2G3CWX3_CAPCH) SL4.0ch03 + View
Schrenkiella parvula Sp2g23180 ch2-4 - View
Schrenkiella parvula Sp6g15360 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) ch6-6 - View
Solanum pennellii Sopen06g017940 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. | polypyrimidine tract-binding protein 2 (PTB2) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation | LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm | EXPRESSED IN: 31 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 Spenn-ch06 + View
Solanum pennellii Sopen03g003280 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. | polypyrimidine tract-binding protein 2 (PTB2) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation | LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm | EXPRESSED IN: 31 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400009074 Conserved gene of unknown function ST4.03ch03 + View
Solanum tuberosum PGSC0003DMG400002353 Polypyrimidine tract binding protein ST4.03ch06 + View
Trochodendron aralioides TAR375G0325 group15 + View
Trochodendron aralioides TAR629G1462 group0 + View
Theobroma cacao Thecc.03G193600 General transcription factor IIF subunit 1 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104800290 polypyrimidine tract-binding protein homolog 2-like isoform X1 NW_010969135.1 + View
Tarenaya hassleriana THA.LOC104811931 polypyrimidine tract-binding protein homolog 2 isoform X1 NW_010965372.1 - View
Trifolium pratense TPR.G33308 Tp57577_TGAC_v2_LG1 + View
Trifolium pratense TPR.G17305 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI23G0688 NC_052239.1 - View
Tripterygium wilfordii TWI39G1278 NC_052250.1 + View
Utricularia gibba unitig_747.g21850 unitig_747 - View
Vaccinium macrocarpon vmacro06564 Protein of unknown function chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro10110 Similar to At5g53180: Polypyrimidine tract-binding protein homolog 2 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G2916 CM024072.1 + View
Vitis vinifera GSVIVG01028703001 chr16 - View
Zea mays Zm00001eb345000 Zm00001e026648 8 - View