Gene: GSVIVG01028703001
General Information
Structural Information
- Species Vitis vinifera
- Gene Identifier GSVIVG01028703001
- Transcript Identifier GSVIVT01028703001
- Gene Type Coding gene
- Location chr16 : 19642987-19663052 : negative
Gene Family Information
- ID HOM05D000974
- #Genes/#Species 616/99
- Phylogenetic origin
- ID ORTHO05D006133
- #Genes/#Species 147/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id GSVIVG01028703001.Genoscope12X
- pacid 17835739
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0010304 | ISO | PLAZA Integrative Orthology | PSII associated light-harvesting complex II catabolic process | AT5G53170 |
GO:0043484 | ISO | PLAZA Integrative Orthology | regulation of RNA splicing | AT5G53180 |
GO:0000381 | ISO | PLAZA Integrative Orthology | regulation of alternative mRNA splicing, via spliceosome | AT5G53180 |
GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT5G53170 |
GO:0006417 | ISO | PLAZA Integrative Orthology | regulation of translation | AT5G53180 |
GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT5G53180 |
GO:0009846 | ISO | PLAZA Integrative Orthology | pollen germination | AT5G53180 |
GO:0009644 | ISO | PLAZA Integrative Orthology | response to high light intensity | AT5G53170 |
GO:0006508 | IEA | InterPro | proteolysis |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G53180 |
GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT5G53180 |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0004222 | IEA | InterPro | metalloendopeptidase activity | |
GO:0004176 | IEA | InterPro | ATP-dependent peptidase activity | |
GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT5G53170 |
GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G53170 |
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G53180 |
GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G53170 |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G53180 |
GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT5G53180 |
GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G53170 |
GO:0016020 | IEA | InterPro | membrane |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR003959 | ATPase, AAA-type, core |
IPR041569 | AAA ATPase, AAA+ lid domain |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
IPR000642 | Peptidase M41 |
IPR035979 | RNA-binding domain superfamily |
IPR034794 | PTBPH1/PTBPH2, RNA recognition motif 3 |
IPR021790 | PTBP1, RNA recognition motif 2-like |
IPR034792 | PTBPH1/PTBPH2, RNA recognition motif 1 |
IPR000504 | RNA recognition motif domain |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR034793 | PTBPH1/PTBPH2, RNA recognition motif 2 |
IPR037219 | Peptidase M41-like |
IPR005936 | Peptidase, FtsH |
IPR003593 | AAA+ ATPase domain |
Mapman id | Description |
---|---|
16.2.6.7 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB) |
19.4.5.8.1.1 | Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.component FtsH4/11 |