Gene: AT5G53180
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G53180
- Transcript Identifier AT5G53180.2
- Gene Type Coding gene
- Location Chr5 : 21568393-21571081 : negative
Gene Family Information
- ID HOM05D000974
- #Genes/#Species 616/99
- Phylogenetic origin
- ID ORTHO05D002201
- #Genes/#Species 308/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G53180.2
- symbol PTB2
- Alias ATPTB2,POLYPYRIMIDINE TRACT-BINDING PROTEIN 2
- uniprot Q9FGL9
Descriptions
- Description polypyrimidine tract-binding protein 2
- Computational description polypyrimidine tract-binding protein 2 (PTB2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Computational description polypyrimidine tract-binding protein 2 (PTB2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1); Has 1611 Blast hits to 972 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 1107; Fungi - 42; Plants - 324; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0043484 | IDA IBA | Gene Ontology | regulation of RNA splicing | 1 2 |
| GO:0009845 | IMP | Gene Ontology | seed germination | 3 |
| GO:0000381 | IMP | Gene Ontology | regulation of alternative mRNA splicing, via spliceosome | 3 |
| GO:0006417 | IEP | Gene Ontology | regulation of translation | 1 |
| GO:0009846 | IGI | Gene Ontology | pollen germination | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 2 5 6 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IDA | Gene Ontology | RNA binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 2 4 |
| GO:0000932 | IDA | Gene Ontology | P-body | 1 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.6.7 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB) |