Gene: BcaB08g35680
General Information
Structural Information
- Species Brassica carinata
- Gene Identifier BcaB08g35680
- Transcript Identifier BcaB08g35680
- Gene Type Coding gene
- Location ChrB08 : 31529547-31537725 : negative
Gene Family Information
- ID HOM05D000974
- #Genes/#Species 616/99
- Phylogenetic origin
- ID ORTHO05D006133
- #Genes/#Species 147/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006508 | IEA | InterPro | proteolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004176 | IEA | InterPro | ATP-dependent peptidase activity | |
| GO:0004222 | IEA | InterPro | metalloendopeptidase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005936 | Peptidase, FtsH |
| IPR034792 | PTBPH1/PTBPH2, RNA recognition motif 1 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR037219 | Peptidase M41-like |
| IPR035979 | RNA-binding domain superfamily |
| IPR003593 | AAA+ ATPase domain |
| IPR034794 | PTBPH1/PTBPH2, RNA recognition motif 3 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR000504 | RNA recognition motif domain |
| IPR041569 | AAA ATPase, AAA+ lid domain |
| IPR034793 | PTBPH1/PTBPH2, RNA recognition motif 2 |
| IPR000642 | Peptidase M41 |
| IPR021790 | PTBP1, RNA recognition motif 2-like |
| IPR003959 | ATPase, AAA-type, core |
| Mapman id | Description |
|---|---|
| 16.2.6.7 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB) |
| 19.4.5.8.1.1 | Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.component FtsH4/11 |