Gene: Carub.0008s1338

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s1338
  • Transcript Identifier Carub.0008s1338.1
  • Gene Type Coding gene
  • Location scaffold_8 : 7645981-7649038 : negative

Gene Family Information

  • ID HOM05D000974
  • #Genes/#Species 616/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s1338.v1.1
  • pacid 39251113

Descriptions

  • Description K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
ISO
PLAZA Integrative Orthologyregulation of translation AT5G53180
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT5G53180
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT5G53180
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT5G53180
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G53180

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G53180
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G53180

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G53180
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G53180
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G53180

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR034794 PTBPH1/PTBPH2, RNA recognition motif 3
IPR034792 PTBPH1/PTBPH2, RNA recognition motif 1
IPR000504 RNA recognition motif domain
IPR034793 PTBPH1/PTBPH2, RNA recognition motif 2
IPR021790 PTBP1, RNA recognition motif 2-like
Mapman id Description
16.2.6.7 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB)