Gene: Sopen06g017940

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g017940
  • Transcript Identifier Sopen06g017940.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 45070203-45073988 : positive

Gene Family Information

  • ID HOM05D000974
  • #Genes/#Species 616/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g017940.1

Descriptions

  • Description Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. | polypyrimidine tract-binding protein 2 (PTB2) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation | LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm | EXPRESSED IN: 31 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated