Gene: Solyc03g007320.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g007320.4
  • Transcript Identifier Solyc03g007320.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 1911127-1920631 : positive

Gene Family Information

  • ID HOM05D000974
  • #Genes/#Species 616/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g007320.4.1
  • uniprot A0A3Q7FG64
  • gene_id Solyc03g007320

Descriptions

  • Description Polypyrimidine tract-binding protein-like protein 1 (AHRD V3.3 *** A0A2G3CWX3_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G53180
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT5G53180
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT5G53180
GO:0006417
ISO
PLAZA Integrative Orthologyregulation of translation AT5G53180
GO:0043484
IBA
GOA Databaseregulation of RNA splicing
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0043086
IEA
GOA Databasenegative regulation of catalytic activity

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0004864
IEA
GOA Databaseprotein phosphatase inhibitor activity
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G53180
GO:0005634
IBA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034792 PTBPH1/PTBPH2, RNA recognition motif 1
IPR000504 RNA recognition motif domain
IPR034794 PTBPH1/PTBPH2, RNA recognition motif 3
IPR035979 RNA-binding domain superfamily
IPR034793 PTBPH1/PTBPH2, RNA recognition motif 2
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.7 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB)