Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CiPaw.01G215800 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Chr01 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G2730 LG-4 + View
Aethionema arabicum Aa31LG8G1350 LG-8 + View
Acer truncatum Atru.chr1.4088 chr1 + View
Actinidia chinensis Actinidia32206 Lachesis_group27 + View
Arabidopsis lyrata AL2G32060 scaffold_2 + View
Arabidopsis lyrata AL3G26350 scaffold_3 + View
Avicennia marina MSTRG.22534 ScioBoG_3703_HRSCAF_3719 - View
Amaranthus hybridus Ah.15g095140 Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING AmaHy_arrow1_Scaffold_15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NEIN3W PF12090 - Spt20 family (Spt20) arahy.Tifrunner.gnm1.Arahy.09 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M8Z2DU PF12090 - Spt20 family (Spt20) arahy.Tifrunner.gnm1.Arahy.19 - View
Arabidopsis thaliana AT1G72390 nuclear receptor coactivator CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950)%3B Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6%3B Bacteria - 326%3B Metazoa - 4198%3B Fungi - 1506%3B Plants - 923%3B Viruses - 22%3B Other Eukaryotes - 1797 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G14120 nuclear pore complex protein FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%3B LOCATED IN: nuclear pore%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252)%3B Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19%3B Bacteria - 730%3B Metazoa - 2186%3B Fungi - 823%3B Plants - 382%3B Viruses - 37%3B Other Eukaryotes - 1222 (source: NCBI BLink). FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%3B LOCATED IN: nuclear pore%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252)%3B Has 271 Blast hits to 268 proteins in 107 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 69%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC05g29121 ChrC05 - View
Brassica napus C06p46750 C06 + View
Brassica napus A05p35330 A05 - View
Brassica napus C01p50480 C01 - View
Brassica napus A01p39550 A01 - View
Brassica napus C05p53520 C05 - View
Brassica oleracea BolC5t34029H C5 - View
Brassica oleracea BolC1t05000H C1 - View
Brassica oleracea BolC2t09038H C2 + View
Brassica rapa BraA01t03995Z A01 - View
Brassica rapa BraA05t22343Z A05 - View
Beta vulgaris EL10Ac7g16444 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0036669 PREDICTED: uncharacterized protein LOC100265246 [Vitis vinifera] Chr15 - View
Cannabis sativa CANSAT56G0878 NC_044371.1 - View
Cicer arietinum L. Ca_23411_v3 Ca_LG7_v3 + View
Corylus avellana Haze_16065 Similar to PHL: Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc04_g01030 Putative CONTAINS InterPro DOMAIN/s chr4 - View
Citrus clementina Ciclev10027090m.g scaffold_7 + View
Ceratophyllum demersum CDE07G1706 5 + View
Ceratophyllum demersum CDE06G0404 4 + View
Carpinus fangiana Cfa003503 Cfa01 - View
Cardamine hirsuta CARHR065290 At1g72390-like protein Chr2 + View
Cardamine hirsuta CARHR088980 Nuclear pore complex protein Nup107 Chr3 + View
Citrullus lanatus ClCG09G001140 Nuclear pore complex protein Nup107 CG_Chr09 + View
Cucumis melo MELO3C024333.2 DNA-binding protein, putative chr01 - View
Carica papaya Cpa.g.sc25.150 supercontig_25 + View
Chenopodium quinoa AUR62009922 NUP107: Nuclear pore complex protein NUP107 C_Quinoa_Scaffold_2493 + View
Chenopodium quinoa AUR62001442 Protein of unknown function C_Quinoa_Scaffold_2716 - View
Capsella rubella Carub.0002s1924 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED scaffold_2 + View
Capsella rubella Carub.0003s1373 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) scaffold_3 + View
Cucumis sativus L. CsaV3_7G034240 Transcription factor Spt20 chr7 - View
Daucus carota DCAR_026423 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv20408 GWHABJS00000019 + View
Davidia involucrata Dinv37845 GWHABJS00000006 + View
Durio zibethinus Duzib235G0009 NW_019167982.1 + View
Durio zibethinus Duzib192G0748 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019168037.1 - View
Erigeron canadensis ECA234G1749 Conyza_canadensis_scaffold:4 - View
Erigeron canadensis ECA247G2654 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA232G2821 Conyza_canadensis_scaffold:2 + View
Erythranthe guttata Migut.D00924 scaffold_4 - View
Erythranthe guttata Migut.I01106 scaffold_9 + View
Eutrema salsugineum Thhalv10018006m.g PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED scaffold_9 - View
Eutrema salsugineum Thhalv10019957m.g K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) scaffold_13 - View
Fragaria x ananassa FAN02G0489 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) Fvb6-4 + View
Fragaria x ananassa FAN09G3103 PF12090 - Spt20 family (Spt20) Fvb6-2 - View
Fragaria x ananassa FAN05G2069 PF12090 - Spt20 family (Spt20) Fvb6-3 - View
Fragaria x ananassa FAN14G5889 PF12090 - Spt20 family (Spt20) Fvb6-1 - View
Fragaria vesca FvH4_6g35170 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) Fvb6 + View
Gossypium hirsutum Gohir.A05G138700 PF12090 - Spt20 family (Spt20) A05 - View
Gossypium hirsutum Gohir.D05G140900 PF12090 - Spt20 family (Spt20) D05 - View
Glycine max Glyma.07G042000 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) Gm07 + View
Glycine max Glyma.16G010300 PTHR13003 - NUP107-RELATED Gm16 + View
Gossypium raimondii Gorai.009G145100 Chr09 - View
Gossypium raimondii Gorai.010G174200 Chr10 - View
Helianthus annuus HanXRQChr12g0360181 Putative transcription factor Spt20 HanXRQChr12 - View
Helianthus annuus HanXRQChr04g0094421 Putative transcription factor Spt20 HanXRQChr04 + View
Helianthus annuus HanXRQChr10g0311861 Probable CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950) HanXRQChr10 + View
Helianthus annuus HanXRQChr09g0277131 Probable FUNCTIONS IN: molecular_function unknown HanXRQChr09 + View
Hydrangea macrophylla Hma1.2p1_0229F.1_g096760 Hma1.2p1_0229F.1 + View
Lupinus albus Lalb_Chr10g0101311 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Lalb_Chr10 - View
Lupinus albus Lalb_Chr04g0253751 PF12090 - Spt20 family (Spt20) Lalb_Chr04 + View
Lupinus albus Lalb_Chr17g0343441 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Lalb_Chr17 - View
Lotus japonicus Lj3g0004011 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) chr3 + View
Lonicera japonica Lj9C535G6 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_4_91381 Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_1_37801 Lsat_1_v8_lg_1 + View
Magnolia biondii MBI19_g29883_MAGBIO AED:0.14 Chr19 + View
Magnolia biondii MBI13_g01700_MAGBIO AED:0.14 Chr13 + View
Malus domestica MD09G1178000 Protein of unknown function Chr09 - View
Malus domestica MD17G1148600 Protein of unknown function Chr17 + View
Manihot esculenta Manes.11G016300 Chromosome11 - View
Manihot esculenta Manes.04G148200 Chromosome04 + View
Medicago truncatula Medtr8g022010 nuclear pore protein chr8 + View
Nicotiana tabacum Nitab4.5_0002716g0060 Transcription factor Spt20 Nitab4.5_0002716 + View
Nicotiana tabacum Nitab4.5_0000189g0010 Nuclear pore protein 84/107 Nitab4.5_0000189 - View
Olea europaea Oeu013447.1 chr2 - View
Olea europaea Oeu000390.1 chr17 - View
Petunia axillaris Peaxi162Scf00207g01546 DNA binding protein, putative Peaxi162Scf00207 + View
Punica granatum PGR102G3102 NC_045129.1 + View
Punica granatum PGR119G1999 NC_045132.1 + View
Prunus persica Prupe.3G037300 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Pp03 - View
Populus trichocarpa Potri.003G069200 PF12090 - Spt20 family (Spt20) Chr03 + View
Populus trichocarpa Potri.001G165800 PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Chr01 - View
Quercus lobata QL05p003384 5 - View
Rosa chinensis RcHm_v2.0_Chr2g0146431 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0241300 chr08 + View
Striga asiatica SGA_v2.0_scaffold4G02078 scaffold4 + View
Striga asiatica SGA_v2.0_scaffold71G23886 scaffold71 - View
Salvia bowleyana SalBow6G6581 GWHASIU00000002 + View
Salvia bowleyana SalBow7G1889 GWHASIU00000005 + View
Salix brachista Sabra01G0127400 GWHAAZH00000001 + View
Salix brachista Sabra03G0040600 GWHAAZH00000003 + View
Simmondsia chinensis Sc15g0000590 GWHAASQ00000015 + View
Sechium edule Sed0014139 LG09 - View
Sechium edule Sed0016273 LG04 + View
Solanum lycopersicum Solyc06g063010.4 nuclear receptor coactivator (AHRD V3.3 *** AT1G72390.2) SL4.0ch06 + View
Solanum lycopersicum Solyc12g049410.3 Nuclear pore complex protein (AHRD V3.3 *** A0A2G2XYI0_CAPAN) SL4.0ch12 + View
Schrenkiella parvula Sp3g12380 K14301 - nuclear pore complex protein Nup107 (NUP107, NUP84) ch3-1 + View
Solanum pennellii Sopen12g023890 FUNCTIONS IN: molecular_function unknown | INVOLVED IN: transport | LOCATED IN: nuclear pore | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 . Spenn-ch12 + View
Solanum pennellii Sopen06g022460 CONTAINS InterPro DOMAIN/s: Spt20 family Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG401004368 Gene of unknown function ST4.03ch12 + View
Selenicereus undatus Hund18671 Scaffold_33675 - View
Trochodendron aralioides TAR626G0481 group3 - View
Theobroma cacao Thecc.06G124800 Nuclear pore complex protein Nup107 Chromosome_6 + View
Tarenaya hassleriana THA.LOC104812264 uncharacterized protein LOC104812264 NW_010965372.1 + View
Tarenaya hassleriana THA.LOC104822664 nuclear pore complex protein NUP107 NW_010966725.1 + View
Tripterygium wilfordii TWI59G0043 NC_052248.1 - View
Tripterygium wilfordii TWI14G1157 NC_052249.1 - View
Vaccinium macrocarpon vmacro15054 Similar to NUP107: Nuclear pore complex protein NUP107 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G1611 CM024078.1 + View
Vitis vinifera GSVIVG01016716001 chr9 - View