Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 2361.3 1353 100.0
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1725.3 1381 75.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1542.7 1364 67.4
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1520.8 1429 67.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1437.2 1399 66.6
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1434.1 1373 66.0
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1404.0 1371 64.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1395.6 1397 64.4
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1379.0 1392 63.3
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1345.5 1394 62.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1343.6 1408 61.6
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1343.2 1384 56.4
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1338.2 1393 64.3
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1327.0 1400 60.1
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1317.8 1383 58.0
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1311.6 1403 60.1
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1303.9 1383 63.6
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1303.1 1407 62.5
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1298.1 1405 62.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1293.9 1390 61.9
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1286.6 1388 60.0
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1279.6 1432 61.0
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1275.8 1420 61.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1271.5 1397 58.1
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1270.0 1402 57.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1269.6 1318 60.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1260.4 1371 59.0
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1257.3 1398 60.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1248.4 1465 56.3
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1242.6 1378 57.5
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1242.6 1372 56.9
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1233.0 1368 58.8
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1229.5 1389 58.5
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1224.2 1374 56.3
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1222.6 1408 58.2
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1222.2 1374 57.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1221.1 1402 57.7
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1219.9 1403 57.6
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1218.8 1372 57.1
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1203.3 1401 58.5
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1203.0 1397 55.5
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1200.7 1406 56.6
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1197.6 1374 56.6
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1196.0 1526 53.0
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1194.9 1384 57.2
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1194.5 1396 55.9
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1194.1 1397 55.8
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1192.2 1422 57.7
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1189.5 1380 56.7
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1178.3 1387 55.2
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1174.1 1401 54.9
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1172.1 1396 56.3
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1166.0 1371 54.8
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1159.8 1372 55.4
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1159.4 1372 55.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1159.4 1352 56.2
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1144.8 1392 55.5
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1143.3 1224 62.7
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 0.0e+00 1112.1 1382 52.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1097.8 1382 53.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 0.0e+00 1079.7 1413 55.7
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 6.5e-311 1071.2 1376 52.8
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 4.5e-309 1065.1 1411 51.9
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 3.3e-307 1058.9 1446 56.7
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 5.5e-307 1058.1 1226 58.9
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 7.2e-307 1057.7 1052 59.0
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.6e-306 1055.4 1241 53.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 3.4e-304 1048.9 1387 50.7
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 5.7e-304 1048.1 1387 51.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 6.4e-295 1018.1 1385 50.8
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 6.4e-295 1018.1 1256 51.5
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 2.7e-285 986.1 1401 49.2
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.7e-284 983.4 1184 51.8
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.4e-281 973.8 1402 49.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 4.0e-281 972.2 1432 47.3
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.9e-278 963.4 1397 48.7
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.2e-278 962.6 1248 49.5
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 5.4e-278 961.8 1420 47.3
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.9e-276 955.7 1414 48.2
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-275 954.1 1398 48.2
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.8e-274 949.5 1417 47.9
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.4e-273 947.2 904 58.4
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 3.1e-273 946.0 1377 45.3
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 3.2e-270 936.0 933 58.1
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 3.2e-270 936.0 1182 49.7
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 9.2e-270 934.5 1429 47.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.7e-268 930.2 1406 45.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 6.6e-268 928.3 1249 50.0
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 3.3e-267 926.0 1429 47.3
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.3e-267 925.6 1376 46.9
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 2.9e-263 912.9 782 65.0
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 8.4e-263 911.4 1522 46.0
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 5.4e-262 908.7 1540 45.6
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 5.1e-260 902.1 1400 46.7
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 8.7e-260 901.4 1392 46.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 8.7e-260 901.4 1392 46.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.1e-259 901.0 1392 46.8
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 2.1e-258 896.7 1394 46.7
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 6.4e-255 885.2 1376 47.7
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-251 874.4 1311 47.1
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.6e-250 870.5 1101 53.6
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.0e-249 865.9 1441 43.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.1e-242 843.6 1366 47.1
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 8.2e-234 815.1 1423 45.7
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.4e-233 814.3 1217 45.0
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 9.7e-227 791.6 531 77.2
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 9.7e-227 791.6 923 52.0
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.1e-225 786.6 1376 41.4
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 5.5e-222 775.8 843 54.9
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 3.0e-220 770.0 1381 46.5
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 3.0e-220 770.0 1404 41.3
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 6.7e-220 768.8 1396 43.1
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.8e-217 760.8 1053 54.3
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.5e-215 751.9 1136 46.5
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 4.0e-204 716.5 1054 45.4
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 4.0e-204 716.5 1389 43.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 7.5e-195 685.6 1397 40.9
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.8e-194 683.7 794 51.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-172 611.7 1221 38.8
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 7.5e-171 605.9 897 56.2
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.1e-161 573.5 1238 38.2
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 9.6e-158 562.4 1256 40.9
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.9e-153 548.1 1314 37.7
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 2.9e-146 524.2 1292 35.4
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.1e-137 493.0 1409 34.8
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.9e-118 431.8 1415 33.2
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 6.3e-117 426.8 1396 31.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 6.3e-117 426.8 476 50.8
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.5e-110 404.8 326 65.6
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 7.0e-100 370.2 509 46.2
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.8e-93 348.2 1211 31.6
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.7e-93 347.8 1031 32.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 4.7e-88 330.9 397 48.9
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 6.8e-87 327.0 537 43.6
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.5e-82 310.5 1301 33.2
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 3.7e-77 294.7 449 45.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 2.0e-67 262.3 855 29.5
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.7e-66 259.2 1110 27.9
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.3e-66 258.8 966 28.1
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.2e-64 253.1 983 28.1
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.8e-63 249.2 962 29.6
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 9.8e-62 243.4 583 52.1
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.0e-59 234.2 213 58.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.2e-53 215.7 327 38.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 3.7e-53 214.9 867 26.0
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.2e-52 211.8 650 30.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.2e-51 209.9 276 45.3
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 6.0e-51 207.6 213 58.2
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 3.0e-50 205.3 862 27.8
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 3.6e-48 198.4 220 50.9
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 4.7e-48 198.0 859 27.2
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.1e-44 186.8 560 30.5
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 8.6e-42 177.2 191 52.4
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 4.3e-41 174.9 245 41.6
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-38 166.8 671 28.2
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.0e-38 166.0 1055 24.8
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 2.6e-38 165.6 497 29.4
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 4.4e-38 164.9 1008 25.3
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 4.2e-36 158.3 1018 24.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.0e-34 153.7 128 56.2
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 4.2e-28 131.7 211 56.4
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 4.6e-27 128.3 845 25.0
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.9e-25 122.9 125 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.4e-23 116.7 684 23.2
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 5.3e-23 114.8 84 61.9
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.9e-21 108.2 141 46.1
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.4e-20 106.7 157 42.7
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 5.5e-20 104.8 161 33.5
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.5e-20 104.8 90 58.9
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.0e-18 99.0 391 30.9
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.9e-18 98.6 234 37.2
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.8e-16 92.4 88 52.3
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 9.3e-12 77.4 86 45.3
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 1.2e-11 77.0 274 35.0
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 7.9e-11 74.3 344 27.0
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 5.1e-10 71.6 239 30.5
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 5.7e-09 68.2 126 35.7
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.3e-08 67.0 69 52.2
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.1e-07 62.4 61 52.5
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 6.9e-07 61.2 42 64.3
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 3.4e-06 58.9 52 51.9
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.6e-06 57.8 34 73.5


User provided reference genes

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