Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001849', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001849' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001849' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001849' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001849' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001849', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001849' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001849' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001849' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001849' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001849', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001849' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001849' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001849' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001849' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001849', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001849' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001849', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '354', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' ) ), 'genes' => array( 'A01p39550' => 'bna', 'A02p17980' => 'bna', 'A05p35330' => 'bna', 'A07p38580' => 'bna', 'Aa31LG4G2730' => 'aar', 'Aa31LG8G1350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2383' => 'aag', 'Actinidia08004' => 'ach', 'Actinidia14933' => 'ach', 'Actinidia16695' => 'ach', 'Actinidia32206' => 'ach', 'Actinidia32207' => 'ach', 'Actinidia32208' => 'ach', 'Ah.15g095140' => 'amhyb', 'AL2G32060' => 'aly', 'AL3G26350' => 'aly', 'Aqoxy7G04006' => 'aox', 'Aqoxy7G04079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1RN2YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8Z2DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NEIN3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMM65D' => 'arhy', 'AT1G72390' => 'ath', 'AT3G14120' => 'ath', 'ATR0681G273' => 'atr', 'ATR0681G401' => 'atr', 'Atru.chr1.4088' => 'acertr', 'Atru.chr11.322' => 'acertr', 'Atru.chr11.323' => 'acertr', 'Atru.chr11.324' => 'acertr', 'Atru.chr12.2376' => 'acertr', 'Atru.chr12.2396' => 'acertr', 'Atru.chr2.1505' => 'acertr', 'AUR62001442' => 'cqu', 'AUR62001443' => 'cqu', 'AUR62009922' => 'cqu', 'AUR62009923' => 'cqu', 'BcaB03g14986' => 'bca', 'BcaB03g14988' => 'bca', 'BcaB05g24751' => 'bca', 'BcaC03g15372' => 'bca', 'BcaC03g15374' => 'bca', 'BcaC05g29121' => 'bca', 'BcaNung06672' => 'bca', 'BolC1t05000H' => 'bol', 'BolC2t09038H' => 'bol', 'BolC2t10453H' => 'bol', 'BolC5t34029H' => 'bol', 'BolC6t39719H' => 'bol', 'BraA01t03995Z' => 'bra', 'BraA02t06845Z' => 'bra', 'BraA05t22343Z' => 'bra', 'BraA07t31416Z' => 'bra', 'C01p30760' => 'bna', 'C01p50480' => 'bna', 'C02p29880' => 'bna', 'C02p44100' => 'bna', 'C05p53520' => 'bna', 'C06p46750' => 'bna', 'CAN.G1243.8' => 'can', 'CAN.G1243.9' => 'can', 'CAN.G1743.7' => 'can', 'CANSAT01G2891' => 'cansat', 'CANSAT56G0878' => 'cansat', 'CANSAT56G4149' => 'cansat', 'CARHR065290' => 'chi', 'CARHR088980' => 'chi', 'Carub.0002s1924' => 'cru', 'Carub.0003s1373' => 'cru', 'Ca_13542_v3' => 'car', 'Ca_23411_v3' => 'car', 'Ca_23412_v3' => 'car', 'Ca_23413_v3' => 'car', 'CBR_g31688' => 'cbr', 'CBR_g39720' => 'cbr', 'Cc04_g01030' => 'ccan', 'Cc04_g01040' => 'ccan', 'Cc04_g01050' => 'ccan', 'CDE06G0404' => 'cde', 'CDE06G0789' => 'cde', 'CDE07G1134' => 'cde', 'CDE07G1198' => 'cde', 'CDE07G1706' => 'cde', 'Cfa003503' => 'cfa', 'Cfa003510' => 'cfa', 'Cfa015821' => 'cfa', 'Ciclev10024725m.g' => 'ccl', 'Ciclev10027090m.g' => 'ccl', 'CiPaw.01G215800' => 'cil', 'CiPaw.01G216000' => 'cil', 'CiPaw.02G133700' => 'cil', 'CiPaw.05G244500' => 'cil', 'ClCG09G001140' => 'cla', 'ClCG09G001150' => 'cla', 'COL.COLO4_30797' => 'col', 'COL.COLO4_30798' => 'col', 'Cpa.g.sc169.27' => 'cpa', 'Cpa.g.sc169.28' => 'cpa', 'Cpa.g.sc169.29' => 'cpa', 'Cpa.g.sc169.30' => 'cpa', 'Cpa.g.sc169.31' => 'cpa', 'Cpa.g.sc169.33' => 'cpa', 'Cpa.g.sc25.150' => 'cpa', 'Cre10.g425675' => 'cre', 'CsaV3_7G034240' => 'csa', 'CsaV3_7G034250' => 'csa', 'CSS0002239' => 'camsi', 'CSS0003623' => 'camsi', 'CSS0004697' => 'camsi', 'CSS0013236' => 'camsi', 'CSS0014980' => 'camsi', 'CSS0017686' => 'camsi', 'CSS0019722' => 'camsi', 'CSS0020573' => 'camsi', 'CSS0020628' => 'camsi', 'CSS0033574' => 'camsi', 'CSS0033867' => 'camsi', 'CSS0036362' => 'camsi', 'CSS0036461' => 'camsi', 'CSS0036669' => 'camsi', 'CSS0036951' => 'camsi', 'CSS0047517' => 'camsi', 'CSS0050059' => 'camsi', 'DCAR_026423' => 'dca', 'DCAR_026425' => 'dca', 'Dinv04913' => 'din', 'Dinv16157' => 'din', 'Dinv20408' => 'din', 'Dinv37845' => 'din', 'Dinv37967' => 'din', 'Duzib192G0006' => 'dzi', 'Duzib192G0748' => 'dzi', 'Duzib235G0009' => 'dzi', 'Duzib235G0671' => 'dzi', 'Duzib235G1365' => 'dzi', 'ECA232G2821' => 'eca', 'ECA234G1749' => 'eca', 'ECA247G2654' => 'eca', 'EL10Ac7g16444' => 'bvu', 'EL10Ac7g16445' => 'bvu', 'Eucgr.K02038' => 'egr', 'FAN02G0489' => 'fan', 'FAN02G1816' => 'fan', 'FAN05G2069' => 'fan', 'FAN05G2930' => 'fan', 'FAN05G4033' => 'fan', 'FAN09G3103' => 'fan', 'FAN09G4066' => 'fan', 'FAN14G1459' => 'fan', 'FAN14G5889' => 'fan', 'FvH4_6g35170' => 'fve', 'FvH4_6g35180' => 'fve', 'Glyma.07G042000' => 'gma', 'Glyma.07G042100' => 'gma', 'Glyma.16G010300' => 'gma', 'Glyma.16G010400' => 'gma', 'Glyma.16G010466' => 'gma', 'Gohir.A05G138700' => 'ghi', 'Gohir.A06G143000' => 'ghi', 'Gohir.A09G079900' => 'ghi', 'Gohir.D05G140900' => 'ghi', 'Gohir.D06G149500' => 'ghi', 'Gohir.D09G079550' => 'ghi', 'Gorai.006G094800' => 'gra', 'Gorai.009G145100' => 'gra', 'Gorai.010G174200' => 'gra', 'GSVIVG01016716001' => 'vvi', 'GSVIVG01016717001' => 'vvi', 'GSVIVG01016718001' => 'vvi', 'HanXRQChr04g0094421' => 'han', 'HanXRQChr09g0277131' => 'han', 'HanXRQChr10g0311861' => 'han', 'HanXRQChr11g0341991' => 'han', 'HanXRQChr12g0360181' => 'han', 'Haze_00674' => 'cav', 'Haze_16065' => 'cav', 'Haze_16071' => 'cav', 'Haze_16076' => 'cav', 'Hma1.2p1_0225F.1_g094790' => 'hma', 'Hma1.2p1_0229F.1_g096760' => 'hma', 'Hma1.2p1_0229F.1_g096770' => 'hma', 'Hma1.2p1_0229F.1_g096780' => 'hma', 'Hma1.2p1_0436F.1_g152830' => 'hma', 'HPP92_011068' => 'vpl', 'HPP92_021920' => 'vpl', 'HPP92_022009' => 'vpl', 'Hund18671' => 'sun', 'Hund18672' => 'sun', 'Hund18673' => 'sun', 'Lalb_Chr04g0253751' => 'lal', 'Lalb_Chr10g0101311' => 'lal', 'Lalb_Chr10g0101321' => 'lal', 'Lalb_Chr10g0101331' => 'lal', 'Lalb_Chr17g0343441' => 'lal', 'Lj3g0004011' => 'lja', 'Lj3g0013610' => 'lja', 'Lj6A751T55' => 'lonja', 'Lj6P751T18' => 'lonja', 'Lj6P751T20' => 'lonja', 'Lj9C535G6' => 'lonja', 'Lj9C535T9' => 'lonja', 'Lsat_1_v5_gn_1_37801' => 'lsa', 'Lsat_1_v5_gn_3_42421' => 'lsa', 'Lsat_1_v5_gn_4_91381' => 'lsa', 'Lsat_1_v5_gn_7_52500' => 'lsa', 'Lsat_1_v5_gn_8_46020' => 'lsa', 'Manes.04G148200' => 'mes', 'Manes.06G063600' => 'mes', 'Manes.11G016300' => 'mes', 'Manes.11G016400' => 'mes', 'Manes.14G108850' => 'mes', 'Mapoly0024s0112' => 'mpo', 'Mapoly0055s0059' => 'mpo', 'MBI03_g16538_MAGBIO' => 'mbi', 'MBI04_g26258_MAGBIO' => 'mbi', 'MBI13_g01700_MAGBIO' => 'mbi', 'MBI13_g27860_MAGBIO' => 'mbi', 'MBI15_g17575_MAGBIO' => 'mbi', 'MBI16_g25623_MAGBIO' => 'mbi', 'MBI19_g29883_MAGBIO' => 'mbi', 'MBI19_g29884_MAGBIO' => 'mbi', 'MCO04G165' => 'mco', 'MCO11G122' => 'mco', 'MD09G1178000' => 'mdo', 'MD09G1178100' => 'mdo', 'MD16G1035300' => 'mdo', 'MD17G1148600' => 'mdo', 'MD17G1148700' => 'mdo', 'Medtr5g009590' => 'mtr', 'Medtr8g021980' => 'mtr', 'Medtr8g022010' => 'mtr', 'Medtr8g106415' => 'mtr', 'Medtr8g106435' => 'mtr', 'MELO3C024333.2' => 'cme', 'MELO3C024334.2' => 'cme', 'Migut.D00924' => 'egut', 'Migut.I01106' => 'egut', 'MSTRG.22534' => 'ama', 'Nitab4.5_0000189g0010' => 'nta', 'Nitab4.5_0002716g0060' => 'nta', 'Nitab4.5_0003137g0070' => 'nta', 'Nitab4.5_0004322g0010' => 'nta', 'Nitab4.5_0004322g0020' => 'nta', 'Nitab4.5_0004322g0030' => 'nta', 'Nitab4.5_0006425g0080' => 'nta', 'Nitab4.5_0012739g0010' => 'nta', 'Nn3g17987' => 'nnu', 'Nn8g38564' => 'nnu', 'Nn8g38642' => 'nnu', 'Oeu000390.1' => 'oeu', 'Oeu008524.4' => 'oeu', 'Oeu011098.1' => 'oeu', 'Oeu011104.1' => 'oeu', 'Oeu013447.1' => 'oeu', 'Os10g0391100' => 'osa', 'Os11g0643700' => 'osa', 'Peaxi162Scf00177g00518' => 'pax', 'Peaxi162Scf00207g01546' => 'pax', 'PGR102G3102' => 'pgr', 'PGR119G1999' => 'pgr', 'PGSC0003DMG401004368' => 'stu', 'PGSC0003DMG402004368' => 'stu', 'Phvul.010G125600' => 'pvu', 'Phvul.010G127100' => 'pvu', 'Potri.001G165800' => 'ptr', 'Potri.001G165900' => 'ptr', 'Potri.003G069200' => 'ptr', 'Pp3c13_8340' => 'ppa', 'Pp3c3_3510' => 'ppa', 'Pp3c8_15880' => 'ppa', 'PRCOL_00005073' => 'pco', 'Prupe.1G319400' => 'ppe', 'Prupe.3G037300' => 'ppe', 'Prupe.3G037400' => 'ppe', 'Psat4g166800' => 'psa', 'Psat4g166880' => 'psa', 'Psat5g189840' => 'psa', 'PSO063G5035' => 'pso', 'PSO386G0057' => 'pso', 'PSO386G0179' => 'pso', 'PSO386G0247' => 'pso', 'PSO724G0042' => 'pso', 'PSO724G0283' => 'pso', 'PSO724G1390' => 'pso', 'QL01p003145' => 'qlo', 'QL05p003384' => 'qlo', 'QL05p003642' => 'qlo', 'QL05p003662' => 'qlo', 'QL11p014752' => 'qlo', 'RcHm_v2.0_Chr2g0146431' => 'rch', 'RcHm_v2.0_Chr2g0146441' => 'rch', 'Rhsim08G0241300' => 'rsi', 'Rhsim09G0102300' => 'rsi', 'Sabra01G0127400' => 'sbr', 'Sabra01G0127500' => 'sbr', 'Sabra03G0040600' => 'sbr', 'SalBow6G5403' => 'sbo', 'SalBow6G6581' => 'sbo', 'SalBow7G1889' => 'sbo', 'Sc15g0000590' => 'sci', 'Sed0014139' => 'sed', 'Sed0016273' => 'sed', 'SEGI_02030' => 'sgi', 'SEGI_04298' => 'sgi', 'SEGI_09459' => 'sgi', 'SEGI_11558' => 'sgi', 'SEGI_18725' => 'sgi', 'SEGI_21815' => 'sgi', 'SEGI_26020' => 'sgi', 'SEGI_30532' => 'sgi', 'SEGI_32525' => 'sgi', 'SGA_v2.0_scaffold4G02078' => 'sas', 'SGA_v2.0_scaffold71G23886' => 'sas', 'SHI25232' => 'shi', 'SHI29645' => 'shi', 'SHI29648' => 'shi', 'SHI29649' => 'shi', 'SHI29650' => 'shi', 'SHI29651' => 'shi', 'SMO304G0023' => 'smo', 'Solyc06g063010.4' => 'sly', 'Solyc12g049410.3' => 'sly', 'Sopen06g022460' => 'spe', 'Sopen12g023890' => 'spe', 'Sp3g12380' => 'spa', 'Sp5g27470' => 'spa', 'TAR622G0522' => 'tar', 'TAR626G0481' => 'tar', 'TAR626G0833' => 'tar', 'TAR626G0936' => 'tar', 'TAR730G0002' => 'tar', 'THA.LOC104812264' => 'tha', 'THA.LOC104822664' => 'tha', 'Thecc.06G124800' => 'tca', 'Thecc.06G125000' => 'tca', 'Thhalv10018006m.g' => 'esa', 'Thhalv10019957m.g' => 'esa', 'TPR.G29992' => 'tpr', 'TPR.G29998' => 'tpr', 'TWI14G1157' => 'twi', 'TWI59G0043' => 'twi', 'TWI59G1440' => 'twi', 'unitig_578.g16691' => 'ugi', 'unitig_747.g21722' => 'ugi', 'vmacro10613' => 'vma', 'vmacro10614' => 'vma', 'vmacro15054' => 'vma', 'vmacro15055' => 'vma', 'VMungo0331G0811' => 'vmu', 'VMungo0331G1611' => 'vmu', 'Zm00001eb165950' => 'zma', 'Zm00001eb203360' => 'zma', 'Zm00001eb307710' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001849' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001849' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001849' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001849' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151