Gene: Solyc12g049410.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g049410.3
- Transcript Identifier Solyc12g049410.3.1
- Gene Type Coding gene
- Location SL4.0ch12 : 60645930-60667072 : positive
Gene Family Information
- ID HOM05D001849
- #Genes/#Species 354/100
- Phylogenetic origin
- ID ORTHO05D004689
- #Genes/#Species 173/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc12g049410.3.1
- uniprot A0A3Q7JAH8
- gene_id Solyc12g049410
Descriptions
- Description Nuclear pore complex protein (AHRD V3.3 *** A0A2G2XYI0_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0006355 | IBA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006406 | IBA IEA | GOA Database | mRNA export from nucleus | |
| GO:0006606 | IBA IEA | GOA Database | protein import into nucleus | |
| GO:0000973 | IBA | GOA Database | posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery | |
| GO:0051028 | IEA | GOA Database | mRNA transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G14120 |
| GO:0017056 | IBA IEA | GOA Database | structural constituent of nuclear pore | |
| GO:0017056 | IEA | InterPro | structural constituent of nuclear pore |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005635 | ISO | PLAZA Integrative Orthology | nuclear envelope | AT3G14120 |
| GO:0031080 | IBA IEA | GOA Database | nuclear pore outer ring | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005643 | IEA | GOA Database | nuclear pore | |
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0031965 | IEA | GOA Database | nuclear membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007252 | Nuclear pore protein 84/107 |
| Mapman id | Description |
|---|---|
| 23.5.1.1.1.2 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP107) |