Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0032032 PREDICTED: ubiquitin receptor RAD23c [Vitis vinifera] Chr2 - View
CSS0048000 PREDICTED: ubiquitin receptor RAD23c-like isoform 1 [Glycine max] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G13520 LG-11 + View
Aethionema arabicum Aa31LG5G13040 LG-5 - View
Actinidia chinensis Actinidia14882 Lachesis_group14 - View
Actinidia chinensis Actinidia26299 Lachesis_group3 - View
Actinidia chinensis Actinidia16645 Lachesis_group4 + View
Actinidia chinensis Actinidia17631 Lachesis_group21 - View
Actinidia chinensis Actinidia13664 Lachesis_group10 - View
Arabidopsis lyrata AL6G26970 scaffold_6 - View
Arabidopsis lyrata AL3G11900 scaffold_3 - View
Arabidopsis lyrata AL7G52100 scaffold_7 - View
Avicennia marina MSTRG.13520 ScioBoG_18778_HRSCAF_18863 - View
Avicennia marina MSTRG.2246 ScioBoG_102834_HRSCAF_103055 + View
Avicennia marina MSTRG.830 ScioBoG_102831_HRSCAF_103044 - View
Amaranthus hybridus Ah.16g101860 Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3) AmaHy_arrow1_Scaffold_16 + View
Aquilegia oxysepala Aqoxy3G00319 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2R0TWK PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Z4SPH8 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT5G38470 Rad23 UV excision repair protein family Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A)%2C AT1G79650(RAD23B)%2C AT3G02540(RAD23C)%2C AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle%2C morphology%2C and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. RADIATION SENSITIVE23D (RAD23D)%3B FUNCTIONS IN: damaged DNA binding%2C ubiquitin binding%2C proteasome binding%3B INVOLVED IN: response to cold%2C nucleotide-excision repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C Ubiquitin (InterPro:IPR000626)%2C XPC-binding domain (InterPro:IPR015360)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G02540 Rad23 UV excision repair protein family Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A)%2C AT1G79650(RAD23B)%2C AT3G02540(RAD23C)%2C AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle%2C morphology%2C and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. RADIATION SENSITIVE23C (RAD23C)%3B FUNCTIONS IN: ubiquitin binding%2C proteasome binding%3B INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process%2C nucleotide-excision repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C Ubiquitin (InterPro:IPR000626)%2C XPC-binding domain (InterPro:IPR015360)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT5G38470.1)%3B Has 42093 Blast hits to 23907 proteins in 1708 species: Archae - 163%3B Bacteria - 9780%3B Metazoa - 10471%3B Fungi - 4857%3B Plants - 6883%3B Viruses - 1548%3B Other Eukaryotes - 8391 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT5G16090 RAD23 UV excision repair family protein INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1)%3B Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 634%3B Fungi - 179%3B Plants - 321%3B Viruses - 27%3B Other Eukaryotes - 150 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC02g09649 ChrC02 + View
Brassica carinata BcaC04g18908 ChrC04 + View
Brassica carinata BcaC01g04440 ChrC01 + View
Brassica carinata BcaB06g27225 ChrB06 + View
Brassica napus A03p33000 A03 - View
Brassica napus C03p40140 C03 - View
Brassica napus A04p11430 A04 + View
Brassica napus C04p45120 C04 + View
Brassica oleracea BolC9t58933H C9 + View
Brassica oleracea BolC3t16280H C3 - View
Brassica oleracea BolC4t26092H C4 + View
Brassica rapa BraA10t44363Z A10 + View
Beta vulgaris EL10Ac2g04585 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr2_EL10_PGA_scaffold6 + View
Beta vulgaris EL10Ac6g14429 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr6_EL10_PGA_scaffold0 + View
Capsicum annuum CAN.G625.7 PGAv.1.6.scaffold625 - View
Cannabis sativa CANSAT64G1121 NC_044379.1 - View
Cicer arietinum L. Ca_04067_v3 Ca_LG2_v3 + View
Cicer arietinum L. Ca_11180_v3 Ca_LG4_v3 + View
Corylus avellana Haze_14142 Similar to RAD23C: Ubiquitin receptor RAD23c (Arabidopsis thaliana OX%3D3702) 5 - View
Corylus avellana Haze_17469 Similar to RAD23C: Ubiquitin receptor RAD23c (Arabidopsis thaliana OX%3D3702) 7 - View
Coffea canephora Cc07_g08860 Putative DNA repair protein RAD23-3 chr7 + View
Citrus clementina Ciclev10031777m.g scaffold_4 + View
Citrus clementina Ciclev10011886m.g scaffold_6 + View
Carpinus fangiana Cfa018605 Cfa07 + View
Carpinus fangiana Cfa007930 Cfa03 + View
Cardamine hirsuta CARHR076540 Rad23 UV excision repair protein family Chr3 - View
Carya illinoinensis CiPaw.04G041200 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr04 - View
Carya illinoinensis CiPaw.03G060800 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr03 - View
Citrullus lanatus ClCG05G022800 Uv excision repair protein rad23, putative CG_Chr05 + View
Cucumis melo MELO3C012238.2 ubiquitin receptor RAD23c-like chr10 + View
Corchorus olitorius COL.COLO4_05462 hypothetical protein AWUE01012361.1 + View
Chenopodium quinoa AUR62035244 RAD23C: Ubiquitin receptor RAD23c C_Quinoa_Scaffold_2868 + View
Chenopodium quinoa AUR62023321 RAD23D: Ubiquitin receptor RAD23d C_Quinoa_Scaffold_1352 + View
Chenopodium quinoa AUR62008982 RAD23D: Ubiquitin receptor RAD23d C_Quinoa_Scaffold_1710 - View
Capsella rubella Carub.0007s3743 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED scaffold_7 - View
Capsella rubella Carub.0003s0165 PTHR10621:SF0 - AT15685P-RELATED scaffold_3 - View
Cucumis sativus L. CsaV3_5G034230 ubiquitin receptor RAD23c-like chr5 - View
Daucus carota DCAR_017203 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_023665 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv33937 GWHABJS00000014 - View
Davidia involucrata Dinv04478 GWHABJS00000008 + View
Davidia involucrata Dinv34833 GWHABJS00000012 + View
Durio zibethinus Duzib251G0773 NW_019167971.1 + View
Eucalyptus grandis Eucgr.B03019 Chr02 + View
Erythranthe guttata Migut.L00311 scaffold_12 - View
Erythranthe guttata Migut.H00209 scaffold_8 - View
Erythranthe guttata Migut.E00329 scaffold_5 - View
Eutrema salsugineum Thhalv10016009m.g K10839 - UV excision repair protein RAD23 (RAD23, HR23) scaffold_2 - View
Eutrema salsugineum Thhalv10027790m.g PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED scaffold_14 - View
Eutrema salsugineum Thhalv10020817m.g PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED scaffold_13 + View
Fragaria x ananassa FAN05G2022 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6-3 + View
Fragaria x ananassa FAN12G1493 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb4-3 - View
Fragaria x ananassa FAN14G5168 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6-1 + View
Fragaria x ananassa FAN07G0481 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb4-4 - View
Fragaria x ananassa FAN09G2681 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED Fvb6-2 - View
Fragaria x ananassa FAN22G2053 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb4-1 + View
Fragaria vesca FvH4_6g45190 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6 - View
Fragaria vesca FvH4_4g27550 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb4 + View
Glycine max Glyma.18G297400 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Gm18 + View
Glycine max Glyma.10G275100 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Gm10 + View
Hydrangea macrophylla Hma1.2p1_0550F.1_g177380 Hma1.2p1_0550F.1 - View
Hydrangea macrophylla Hma1.2p1_0136F.1_g062210 Hma1.2p1_0136F.1 - View
Lupinus albus Lalb_Chr04g0257401 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Lalb_Chr04 - View
Lupinus albus Lalb_Chr06g0166151 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED Lalb_Chr06 + View
Lupinus albus Lalb_Chr17g0342101 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Lalb_Chr17 - View
Lupinus albus Lalb_Chr02g0146051 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Lalb_Chr02 + View
Lupinus albus Lalb_Chr10g0091191 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Lalb_Chr10 - View
Lupinus albus Lalb_Chr10g0099971 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED Lalb_Chr10 - View
Lotus japonicus Lj1g0010181 K10839 - UV excision repair protein RAD23 (RAD23, HR23) chr1 - View
Lonicera japonica Lj2C443G8 GWHAAZE00000002 + View
Lonicera japonica Lj3A1017G47 GWHAAZE00000003 + View
Lonicera japonica Lj6A760T49 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_8_39020 Lsat_1_v8_lg_8 - View
Malus domestica MD17G1075700 Rad23 UV excision repair protein family Chr17 - View
Malus domestica MD16G1043900 Rad23 UV excision repair protein family Chr16 + View
Malus domestica MD09G1087400 Rad23 UV excision repair protein family Chr09 - View
Malus domestica MD13G1043000 Rad23 UV excision repair protein family Chr13 + View
Manihot esculenta Manes.06G069400 Chromosome06 + View
Manihot esculenta Manes.01G109600 Chromosome01 - View
Manihot esculenta Manes.14G101300 Chromosome14 - View
Manihot esculenta Manes.02G067800 Chromosome02 - View
Medicago truncatula Medtr7g407040 RAD23 UV excision repair family protein chr7 - View
Medicago truncatula Medtr1g111090 RAD23 UV excision repair family protein chr1 + View
Nelumbo nucifera Nn3g17814 chr3 - View
Nelumbo nucifera Nn4g23813 chr4 - View
Nicotiana tabacum Nitab4.5_0001569g0120 Heat shock chaperonin-binding, XPC-binding domain, Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote, Ubiquitin supergroup, UBA-like, UV excision repair protein Rad23, Ubiquitin domain, Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal Nitab4.5_0001569 - View
Nicotiana tabacum Nitab4.5_0005199g0040 Ubiquitin domain, Heat shock chaperonin-binding, UBA-like, Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote, XPC-binding domain, UV excision repair protein Rad23, Ubiquitin supergroup, Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal Nitab4.5_0005199 - View
Olea europaea Oeu050370.2 chr10 - View
Olea europaea Oeu030778.1 scaffold256 + View
Petunia axillaris Peaxi162Scf00814g00225 Rad23 UV excision repair protein family Peaxi162Scf00814 + View
Punica granatum PGR119G0514 NC_045132.1 + View
Prunus persica Prupe.3G238000 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Pp03 + View
Prunus persica Prupe.1G309400 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Pp01 - View
Papaver somniferum PSO478G1116 NC_039361.1 + View
Papaver somniferum PSO063G3886 NC_039364.1 + View
Papaver somniferum PSO017G0864 NC_039362.1 + View
Papaver somniferum PSO782G5484 NC_039365.1 + View
Populus trichocarpa Potri.008G119700 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr08 - View
Populus trichocarpa Potri.017G114000 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr17 - View
Populus trichocarpa Potri.004G100700 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr04 + View
Populus trichocarpa Potri.010G126200 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Chr10 - View
Phaseolus vulgaris Phvul.007G026400 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED Chr07 - View
Quercus lobata QL02p051988 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr4g0435391 RcHm_v2.0_Chr4 + View
Rosa chinensis RcHm_v2.0_Chr2g0162901 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim12G0083000 chr12 - View
Rhododendron simsii Rhsim09G0109100 chr09 + View
Striga asiatica SGA_v2.0_scaffold14G06852 scaffold14 - View
Salix brachista Sabra10G0095900 GWHAAZH00000010 - View
Salix brachista Sabra04G0079300 GWHAAZH00000004 - View
Simmondsia chinensis Sc11g0008270 GWHAASQ00000011 - View
Simmondsia chinensis Sc10g0001230 GWHAASQ00000010 + View
Simmondsia chinensis Sc14g0007520 GWHAASQ00000014 + View
Sechium edule Sed0024821 LG06 - View
Solanum lycopersicum Solyc02g063130.4 RAD23 protein (AHRD V3.3 *** Q9STA6_SOLLC) SL4.0ch02 - View
Solanum lycopersicum Solyc02g085840.2 RAD23 homolog SL4.0ch02 - View
Schrenkiella parvula Sp7g03580 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED ch7-1 - View
Schrenkiella parvula Sp3g01570 PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 // SUBFAMILY NOT NAMED ch3-1 - View
Solanum pennellii Sopen02g014200 Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | RADIATION SENSITIVE23C (RAD23C) | FUNCTIONS IN: ubiquitin binding, proteasome binding | INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding , Ubiquitin-associated/translation elongation factor EF1B, N-terminal , Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote , UV excision repair protein Rad23 , Ubiquitin , Ubiquitin supergroup , XPC-binding domain , UBA-like | BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family ., Probable DNA repair protein RAD23 (OsRAD23) - Oryza sativa (Rice) Spenn-ch02 - View
Solanum pennellii Sopen02g030530 Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | RADIATION SENSITIVE23C (RAD23C) | FUNCTIONS IN: ubiquitin binding, proteasome binding | INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding , Ubiquitin-associated/translation elongation factor EF1B, N-terminal , Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote , UV excision repair protein Rad23 , Ubiquitin , Ubiquitin supergroup , XPC-binding domain , UBA-like | BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family ., Probable DNA repair protein RAD23 (OsRAD23) - Oryza sativa (Rice) Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400024190 RAD23 ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400012654 RAD23 protein ST4.03ch02 - View
Selenicereus undatus Hund16138 Scaffold_33677 - View
Selenicereus undatus Hund13725 Scaffold_33679 + View
Selenicereus undatus Hund25077 Scaffold_3410 + View
Trochodendron aralioides TAR371G1262 group13 + View
Trochodendron aralioides TAR622G0705 group8 + View
Trochodendron aralioides TAR629G2621 group0 - View
Theobroma cacao Thecc.02G356500 Rad23 UV excision repair protein family Chromosome_2 + View
Theobroma cacao Thecc.04G135400 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104823864 ubiquitin receptor RAD23d isoform X1 NW_010966881.1 + View
Tarenaya hassleriana THA.LOC104803002 ubiquitin receptor RAD23c-like NW_010970490.1 - View
Trifolium pratense TPR.G9716 Tp57577_TGAC_v2_LG6 - View
Vaccinium macrocarpon vmacro05561 Similar to RAD23C: Ubiquitin receptor RAD23c (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro10552 Similar to RAD23C: Ubiquitin receptor RAD23c (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro01376 Similar to RAD23D: Ubiquitin receptor RAD23d (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01011907001 chr1 - View
Vitis vinifera GSVIVG01031048001 chr14 + View