Gene: Potri.004G100700

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.004G100700
  • Transcript Identifier Potri.004G100700.4
  • Gene Type Coding gene
  • Location Chr04 : 8740774-8750772 : positive

Gene Family Information

  • ID HOM05D001266
  • #Genes/#Species 494/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.004G100700.v4.1
  • pacid 42795533
  • synonym POPTR_0004s10000

Descriptions

  • Description K10839 - UV excision repair protein RAD23 (RAD23, HR23)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G38470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0070628
ISO
PLAZA Integrative Orthologyproteasome binding AT5G38470
GO:0043130
ISO
PLAZA Integrative Orthologyubiquitin binding AT5G38470
GO:0031593
ISO
PLAZA Integrative Orthologypolyubiquitin modification-dependent protein binding AT5G38470

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G38470
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G38470
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G38470

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR000626 Ubiquitin-like domain
IPR009060 UBA-like superfamily
IPR015940 Ubiquitin-associated domain
IPR006636 Heat shock chaperonin-binding
IPR004806 UV excision repair protein Rad23
IPR036353 XPC-binding domain superfamily
IPR015360 XPC-binding domain
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
19.2.4.2.4.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23)