Gene: Solyc02g085840.2

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc02g085840.2
Transcript Identifier Solyc02g085840.2.1
Gene Type Coding gene
Location SL4.0ch02 : 46639579-46641807 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D001266
#Genes/#Species 494/100
Phylogenetic origin

ID ORTHO05D001105
#Genes/#Species 484/99
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Solyc02g085840.2.1
gene_id Solyc02g085840

Descriptions

Short descriptions
Ortholog descriptions

Description RAD23 homolog

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006289	IEA	InterPro	nucleotide-excision repair
GO:0043161	IEA	InterPro	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT5G38470

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0003684	IEA	InterPro	damaged DNA binding
GO:0070628	ISO	PLAZA Integrative Orthology	proteasome binding	AT5G38470
GO:0043130	ISO	PLAZA Integrative Orthology	ubiquitin binding	AT5G38470
GO:0031593	ISO	PLAZA Integrative Orthology	polyubiquitin modification-dependent protein binding	AT5G38470

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT5G38470
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT5G38470
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT5G38470

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR009060	UBA-like superfamily
IPR036353	XPC-binding domain superfamily
IPR015360	XPC-binding domain
IPR006636	Heat shock chaperonin-binding
IPR015940	Ubiquitin-associated domain
IPR004806	UV excision repair protein Rad23

Mapman id	Description
19.2.4.2.4.1	Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23)