Gene: PGSC0003DMG400024190
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400024190
- Transcript Identifier PGSC0003DMT400062159
- Gene Type Coding gene
- Location ST4.03ch02 : 21853548-21859689 : negative
Gene Family Information
- ID HOM05D001266
- #Genes/#Species 494/100
- Phylogenetic origin
- ID ORTHO05D001105
- #Genes/#Species 484/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pacid 37424725
- id PGSC0003DMG400024190.v4.03
- uniprot M1C8L6
Descriptions
- Description RAD23
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT5G38470 |
| GO:0043161 | IBA IEA | GOA Database | proteasome-mediated ubiquitin-dependent protein catabolic process | |
| GO:0043161 | IEA | InterPro | proteasome-mediated ubiquitin-dependent protein catabolic process | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006289 | IEA | GOA Database | nucleotide-excision repair | |
| GO:0006289 | IEA | InterPro | nucleotide-excision repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031593 | IBA IEA | GOA Database | polyubiquitin modification-dependent protein binding | |
| GO:0043130 | IBA IEA | GOA Database | ubiquitin binding | |
| GO:0070628 | IBA | GOA Database | proteasome binding | |
| GO:0003684 | IEA | GOA Database | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005654 | IBA IEA | GOA Database | nucleoplasm | |
| GO:0005829 | IBA IEA | GOA Database | cytosol | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004806 | UV excision repair protein Rad23 |
| IPR036353 | XPC-binding domain superfamily |
| IPR006636 | Heat shock chaperonin-binding |
| IPR000626 | Ubiquitin-like domain |
| IPR015940 | Ubiquitin-associated domain |
| IPR009060 | UBA-like superfamily |
| IPR015360 | XPC-binding domain |
| IPR029071 | Ubiquitin-like domain superfamily |
| Mapman id | Description |
|---|---|
| 19.2.4.2.4.1 | Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23) |