Gene: Sopen02g030530

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g030530
  • Transcript Identifier Sopen02g030530.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 52622154-52627791 : negative

Gene Family Information

  • ID HOM05D001266
  • #Genes/#Species 494/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g030530.1

Descriptions

  • Description Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | RADIATION SENSITIVE23C (RAD23C) | FUNCTIONS IN: ubiquitin binding, proteasome binding | INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding , Ubiquitin-associated/translation elongation factor EF1B, N-terminal , Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote , UV excision repair protein Rad23 , Ubiquitin , Ubiquitin supergroup , XPC-binding domain , UBA-like | BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family ., Probable DNA repair protein RAD23 (OsRAD23) - Oryza sativa (Rice)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G38470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0070628
ISO
PLAZA Integrative Orthologyproteasome binding AT5G38470
GO:0043130
ISO
PLAZA Integrative Orthologyubiquitin binding AT5G38470
GO:0031593
ISO
PLAZA Integrative Orthologypolyubiquitin modification-dependent protein binding AT5G38470

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G38470
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G38470
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G38470

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009060 UBA-like superfamily
IPR004806 UV excision repair protein Rad23
IPR015360 XPC-binding domain
IPR036353 XPC-binding domain superfamily
IPR015940 Ubiquitin-associated domain
IPR000626 Ubiquitin-like domain
IPR029071 Ubiquitin-like domain superfamily
IPR006636 Heat shock chaperonin-binding
Mapman id Description
19.2.4.2.4.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23)