Gene: AT5G38470

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G38470
  • Transcript Identifier AT5G38470.1
  • Gene Type Coding gene
  • Location Chr5 : 15404720-15407500 : positive

Gene Family Information

  • ID HOM05D001266
  • #Genes/#Species 494/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G38470.1
  • symbol RAD23D
  • full_name RADIATION SENSITIVE23D
  • uniprot Q84L30

Descriptions

  • Description Rad23 UV excision repair protein family
  • Computational description RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IBA
IEA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289
IEA
Gene Ontologynucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0009409
IEP
Gene Ontologyresponse to cold2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031593
IDA
IBA
Gene Ontologypolyubiquitin modification-dependent protein binding1 3
GO:0003684
IEA
Gene Ontologydamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0005515
IEA
InterProprotein binding
GO:0070628
IDA
IBA
Gene Ontologyproteasome binding1 3
GO:0043130
IDA
IBA
Gene Ontologyubiquitin binding1 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol1 4
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus3
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm3
GO:0005654
IBA
Gene Ontologynucleoplasm1
GO:0009536
HDA
Gene Ontologyplastid5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000626 Ubiquitin-like domain
IPR015940 Ubiquitin-associated domain
IPR009060 UBA-like superfamily
IPR006636 Heat shock chaperonin-binding
IPR036353 XPC-binding domain superfamily
IPR029071 Ubiquitin-like domain superfamily
IPR004806 UV excision repair protein Rad23
IPR015360 XPC-binding domain
Mapman id Description
19.2.4.2.4.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23)